CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33917	Canola	cytosol	91.18	91.35
CDY22779	Canola	cytosol	65.1	64.98
CDY52043	Canola	cytosol	65.1	64.98
CDY32215	Canola	cytosol	64.17	64.53
CDY34430	Canola	cytosol	64.17	64.53
CDY09716	Canola	cytosol	64.73	64.49
CDX90544	Canola	cytosol	64.73	63.89
CDY01921	Canola	cytosol	58.54	58.76
CDX97257	Canola	cytosol	58.35	58.57
CDX93514	Canola	cytosol	59.29	58.3
CDX94988	Canola	cytosol	58.91	58.15
CDY31102	Canola	plasma membrane	59.1	58.12
CDY32165	Canola	cytosol	58.72	57.75
CDY64806	Canola	cytosol	55.91	57.53
CDX90948	Canola	cytosol	55.72	57.34
CDX89948	Canola	cytosol	54.78	56.05
AT1G32880.1	Thale cress	cytosol	19.14	55.74
AT5G52000.1	Thale cress	cytosol	44.47	53.74
VIT_15s0021g00390.t01	Wine grape	cytosol	5.44	53.7
AT5G49305.2	Thale cress	cytosol	35.27	48.96
CDY05194	Canola	cytosol	48.41	48.04
CDY27746	Canola	cytosol	48.41	47.6
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	13.88	40.88
CDY15260	Canola	cytosol	56.85	39.1
CDY55698	Canola	cytosol, plastid	24.95	25.58
CDY04878	Canola	plastid	24.95	25.53
CDY10407	Canola	cytosol	21.95	23.68
CDX70330	Canola	cytosol, extracellular	10.69	21.84

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.3	GO:A0A078F1D5	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3
InterPro:Armadillo	EnsemblPlants:CDY05638	ProteinID:CDY05638	ProteinID:CDY05638.1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0061608	EnsemblPlantsGene:GSBRNA2T00120623001
InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:Importin-a_IBB	InterPro:Importing_su_alpha	PFAM:PF00514
PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316
PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0004EEC943	SEG:seg	:

Description

BnaC02g38990D

Coordinates

chrLK031963:+:442279..444276

Molecular Weight (calculated)

59237.0 Da

IEP (calculated)

5.915

GRAVY (calculated)

-0.249

Length

533 amino acids

Sequence
(BLAST)

001: MSLRPNEKTH VRRNSHKVAV DTEQSRRRRE SNLVEIRKSR REEILKKKRL HVTQEAPHDS TLASPAASVD KMLRNLIGLV AGVSSDDPLS QLESLNQFRL
101: ILSTSKNPPI GMVIESGVVR RFVEFLNKDD SPWLQLEAAW ILTNIASGTR KHTQVVIDHG AVPIFIKLLA SPDEDVREQA VWALGNVAGD SPQCRDYVLE
201: CGAMMPLLAQ LNKHSTLSMI TNATWTLSNF CRGKPKPAFE QVSPALPVLE RLVHSDDEEV LADACWSLSF MSDGGEEEIL SVIEAGVVPR VVELLRHPCP
301: SVVSPALRTI GNIVSGNTQQ TQRVINCGAL PILVKLLTQN YKKSIKRDVC WTIANITAGI KEHIQLVIDA TMIPSLVHLA QYAEFDIKKE ALCAISNATR
401: GGSHEQIKYL VEQRCIKPLC DILVCQDPSV ISVCLDGLEN ILKVGEVEKS SGHLNYSQLV KDAEGLEKIE KLQSNDNNEI YEKAVKILET YWVEQDDDEE
501: TQQEQDAGDD GSHLSIEFGR KRVQVPPGGF NFG

Best Arabidopsis Sequence Match ( AT1G09270.2 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.