Factsheet for AT5G52000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G32880.1	Thale cress	cytosol	24.94	60.11
AT3G06720.2	Thale cress	cytosol	58.05	48.12
AT5G49310.1	Thale cress	cytosol	56.46	47.98
AT5G49305.2	Thale cress	cytosol	41.72	47.92
AT4G16143.2	Thale cress	cytosol	55.78	45.98
CDY33917	Canola	cytosol	55.1	45.68
Bra020649.1-P	Field mustard	cytosol	54.2	44.92
CDY05638	Canola	cytosol	53.74	44.47
AT4G02150.1	Thale cress	cytosol	50.34	41.81
AT1G02690.2	Thale cress	cytosol	49.89	40.82
AT1G09270.1	Thale cress	cytosol	49.21	40.33
AT3G05720.1	Thale cress	cytosol	44.44	37.12
VIT_15s0021g00390.t01	Wine grape	cytosol	4.31	35.19
AT5G03070.1	Thale cress	cytosol, plastid	23.13	19.65

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.3	EntrezGene:835275	ProteinID:AED96157.1	InterPro:ARM-like	InterPro:ARM-type_fold
ArrayExpress:AT5G52000	EnsemblPlantsGene:AT5G52000	RefSeq:AT5G52000	TAIR:AT5G52000	RefSeq:AT5G52000-TAIR-G	EnsemblPlants:AT5G52000.1
TAIR:AT5G52000.1	InterPro:Arm_3	InterPro:Armadillo	ProteinID:BAB11048.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829
GO:GO:0006606	GO:GO:0006607	GO:GO:0006810	GO:GO:0007275	GO:GO:0008139	GO:GO:0008150
GO:GO:0008565	GO:GO:0009987	GO:GO:0015031	GO:GO:0030154	GO:GO:0048235	GO:GO:0061608
InterPro:HEAT_type_2	Symbol:IMPA-8	InterPro:IPR000225	InterPro:IPR011989	InterPro:IPR021133	InterPro:Importing_su_alpha
RefSeq:NP_200013.1	PFAM:PF00514	PFAM:PF16186	PIRSF:PIRSF005673	PO:PO:0000084	PO:PO:0007611
PO:PO:0009046	PO:PO:0020048	PFscan:PS50077	PFscan:PS50176	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22
UniProt:Q9FJ92	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI00000A416F	SEG:seg	:

Description

IMPA8Importin subunit alpha-8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ92]

Coordinates

chr5:-:21118946..21121119

Molecular Weight (calculated)

49340.6 Da

IEP (calculated)

4.837

GRAVY (calculated)

-0.069

Length

441 amino acids

Sequence
(BLAST)

001: MAWKTEVNEV SDDIIDGLWS DDPPLQLESV TKIRRITSQR DISCVIRSGV VPRLVQLLKN QVFPKLQYEV AWALTNIAVD NPGVVVNNNA VPVLIQLIAS
101: PKDYVREQAI WTLSNVAGHS IHYRDFVLNS GVLMPLLRLL YKDTTLRIAT WALRNLCRGK PHPAFDQVKP ALPALEILLH SHDEDVLKNA CMALCHLSEG
201: SEDGIQSVIE AGFVPKLVQI LQLPSPVVLV PALLTIGAMT AGNHQQTQCV INSGALPIIS NMLTRNHENK IKKCACWVIS NITAGTKEQI QSVIDANLIP
301: ILVNLAQDTD FYMKKEAVWA ISNMALNGSH DQIKYMAEQS CIKQLCDILV YSDERTTILK CLDGLENMLK AGEAEKNSED VNPYCLLIED AEGLEKISKL
401: QMNKNDDIYE KAYKILVTNW FEEDDENNNN NVRCDDVDFQ V

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.