Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0060g01510.t01 | Wine grape | cytosol | 62.96 | 6.45 |
| VIT_05s0077g01430.t01 | Wine grape | cytosol | 62.96 | 6.43 |
| VIT_07s0005g01100.t01 | Wine grape | cytosol | 59.26 | 6.05 |
| VIT_14s0060g00930.t01 | Wine grape | cytosol | 57.41 | 5.79 |
| Bra020649.1-P | Field mustard | cytosol | 53.7 | 5.45 |
| CDY33917 | Canola | cytosol | 53.7 | 5.45 |
| CDY05638 | Canola | cytosol | 53.7 | 5.44 |
| AT3G05720.1 | Thale cress | cytosol | 50.0 | 5.11 |
| CDY05194 | Canola | cytosol | 50.0 | 5.03 |
| CDY27746 | Canola | cytosol | 50.0 | 4.98 |
| Bra039416.1-P | Field mustard | cytosol | 44.44 | 4.81 |
| AT5G52000.1 | Thale cress | cytosol | 35.19 | 4.31 |
| AT5G49305.2 | Thale cress | cytosol | 29.63 | 4.17 |
| VIT_00s0183g00040.t01 | Wine grape | cytosol | 11.11 | 3.8 |
| VIT_00s0183g00210.t01 | Wine grape | cytosol | 18.52 | 3.42 |
| VIT_08s0040g02290.t01 | Wine grape | cytosol | 27.78 | 2.9 |
| AT1G32880.1 | Thale cress | cytosol | 3.7 | 1.09 |
Protein Annotations
| ArrayExpress:VIT_15s0021g00390 | EMBL:FN594952 | EnsemblPlants:VIT_15s0021g00390.t01 | EnsemblPlantsGene:VIT_15s0021g00390 | Gene3D:1.25.10.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:Armadillo | InterPro:IPR000225 |
| InterPro:IPR011989 | PFAM:PF00514 | ProteinID:CBI16739 | ProteinID:CBI16739.3 | SUPFAM:SSF48371 | UniParc:UPI0001BE0FE8 |
| UniProt:D7SM61 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr15:-:9874378..9874542
Molecular Weight (calculated)
5885.2 Da
IEP (calculated)
3.913
GRAVY (calculated)
0.652
Length
54 amino acids
Sequence
(BLAST)
(BLAST)
1: MAIDHGAVPM FAKLPGSPSD DVCEQAVWTL RYIASDFPPD VVILSLAMEL CFLC
001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS
Arabidopsis Description
IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.