Factsheet for VIT_14s0060g01510.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0077g01430.t01	Wine grape	cytosol	90.7	90.36
KRH33847	Soybean	nucleus	91.08	90.23
KRG92948	Soybean	nucleus	90.7	89.85
KRG96743	Soybean	nucleus	88.05	87.22
KRH68461	Soybean	nucleus	88.05	87.22
GSMUA_Achr3P24150_001	Banana	cytosol	87.48	86.98
GSMUA_Achr1P14770_001	Banana	cytosol	86.53	86.36
GSMUA_Achr8P06540_001	Banana	cytosol	86.91	86.25
VIT_07s0005g01100.t01	Wine grape	cytosol	85.58	85.26
Os05t0155601-00	Rice	nucleus	83.49	82.4
GSMUA_Achr5P27090_001	Banana	cytosol	85.01	82.2
TraesCS1A01G097400.1	Wheat	nucleus	82.35	81.27
TraesCS1D01G106200.1	Wheat	cytosol	82.35	81.27
TraesCS1B01G126500.1	Wheat	cytosol	82.35	81.27
EES19061	Sorghum	cytosol	81.02	80.57
Zm00001d037606_P001	Maize	cytosol	80.65	80.49
VIT_00s0183g00040.t01	Wine grape	cytosol	24.1	80.38
HORVU1Hr1G022750.2	Barley	plasma membrane	82.16	76.77
VIT_14s0060g00930.t01	Wine grape	cytosol	77.04	75.89
Zm00001d009850_P002	Maize	cytosol	80.46	73.61
VIT_15s0021g00390.t01	Wine grape	cytosol	6.45	62.96
VIT_00s0183g00210.t01	Wine grape	cytosol	29.03	52.4
VIT_08s0040g02290.t01	Wine grape	cytosol	29.6	30.17

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	EntrezGene:100242672	wikigene:100242672	MapMan:23.5.1.3	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	ProteinID:CBI39567	ProteinID:CBI39567.3	UniProt:D7UA03
EMBL:FN596746	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005654
GO:GO:0005737	GO:GO:0005829	GO:GO:0006606	GO:GO:0006607	GO:GO:0006810	GO:GO:0008139
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225	InterPro:IPR002652
InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	EntrezGene:LOC100242672
wikigene:LOC100242672	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176
PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	TIGR:TC51887
UniParc:UPI00015CA208	ArrayExpress:VIT_14s0060g01510	EnsemblPlantsGene:VIT_14s0060g01510	EnsemblPlants:VIT_14s0060g01510.t01	unigene:Vvi.12644	RefSeq:XP_002282816
RefSeq:XP_002282816.1	RefSeq:XP_003633608	RefSeq:XP_003633608.1	SEG:seg	:	:

Description

Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:D7UA03]

Coordinates

chr14:+:1191276..1200467

Molecular Weight (calculated)

58497.0 Da

IEP (calculated)

5.126

GRAVY (calculated)

-0.268

Length

527 amino acids

Sequence
(BLAST)

001: MSLRPSARTE VRRNRYKVSV DAEEGRRRRE DNMVEIRKNR REESLQKKRR EGLQAQTLPA SIHSAAVEKK LEFLPSMVAG VWTDDSNIQL EATTQFRKLL
101: SIERCPPIEE VIQSGVVPRF VEFLVREDFP QLQFEAAWAL TNIASGTSDN TKVVIDHGAV PVFVKLLGSP SDDVREQAVW ALGNVAGDSP RCRDLVLGHG
201: ALLPLLAQLN EHAKLSMLRN ATWTLSNFCR GKPQPPFDQT KPALPALERL IHSNDEEVLT DACWALSYLS DGTNDKIQAV IEAGVCPRLV ELLLHPSPSV
301: LIPALRTVGN IVTGDDMQTQ CIINHQALPC LLNLLTNNHK KSIKKEACWT ISNITAGNKE QIQAVIEANI IGPLVHLLQN AEFDIKKEAA WAISNATSGG
401: SHEQIKYLVS QASIKPLCDL LVCPDPRIVT VCLEGLENIL KVGEAEKNLG STREVNLYAQ MIDDAEGLEK IENLQSHDNT EIYEKAVKIL ETYWLEEEDE
501: TMPPGDSSQP GFRFGEVPVP TGGFNFS

Best Arabidopsis Sequence Match ( AT3G06720.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS

Arabidopsis Description

IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.