Factsheet for HORVU1Hr1G022750.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G126500.1	Wheat	cytosol	93.79	99.06
TraesCS1A01G097400.1	Wheat	nucleus	93.79	99.06
TraesCS1D01G106200.1	Wheat	cytosol	93.62	98.88
Os05t0155601-00	Rice	nucleus	86.7	91.57
Zm00001d037606_P001	Maize	cytosol	84.04	89.77
EES19061	Sorghum	cytosol	84.22	89.62
GSMUA_Achr3P24150_001	Banana	cytosol	78.01	83.02
GSMUA_Achr8P06540_001	Banana	cytosol	77.66	82.49
VIT_14s0060g01510.t01	Wine grape	cytosol	76.77	82.16
GSMUA_Achr1P14770_001	Banana	cytosol	76.6	81.82
Zm00001d009850_P002	Maize	cytosol	83.16	81.42
KRH33847	Soybean	nucleus	76.6	81.2
KRG92948	Soybean	nucleus	76.6	81.2
KRG96743	Soybean	nucleus	74.29	78.76
KRH68461	Soybean	nucleus	73.94	78.38
GSMUA_Achr5P27090_001	Banana	cytosol	75.0	77.61
HORVU3Hr1G034750.5	Barley	cytosol	73.23	77.49
HORVU2Hr1G016300.1	Barley	cytosol	40.07	49.56
HORVU3Hr1G025640.2	Barley	plastid	26.95	29.01

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.3	UniProt:A0A287EWP5	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3
InterPro:Armadillo	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	EnsemblPlantsGene:HORVU1Hr1G022750	EnsemblPlants:HORVU1Hr1G022750.2
InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:Importin-a_IBB	InterPro:Importing_su_alpha	PFAM:PF00514
PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316
PANTHER:PTHR23316:SF35	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI000B46B0E5	SEG:seg	:

Description

Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A287EWP5]

Coordinates

chrchr1H:+:98022480..98027097

Molecular Weight (calculated)

61799.4 Da

IEP (calculated)

4.855

GRAVY (calculated)

-0.291

Length

564 amino acids

Sequence
(BLAST)

001: PFPLFESSPT ASCVRTPPLP PRVSFEGSPT MSLRPNERAE VRRSRYKASV DAEDGRRRRE DQMVEIRKNQ RDANLQKKRR DGFPAGAASA AGGAPQMGHS
101: SALQQKLEGL PAMVQAVLSD DNTVQLEATT QFRKLLSIER SPPIEEVINT GVVPRFIEFL TREDYPQLQF EAAWALTNIA SGTSDNTKVV VEFGAVPIFV
201: KLLSSPSEDV REQAVWALGN VAGDSPKCRD LVLGSGGLYP LLQQLNEHAK LSMLRNATWT LSNFCRGKPQ PNFEQVKPAL SALQRLIHSQ DEEVLTDACW
301: ALSYLSDGTN DKIQSVIESG VFPRLVELLL HPSASVLIPA LRTVGNIVTG DDLQTQCVID NQALPCLLNL LTTNHKKSIK KEACWTISNI TAGNRDQIQA
401: VIQANIIGPL VHLLQGAEFD IKKEAAWAIS NATSGGTHDQ IKYLVGQGCI KPLCDLLICP DPRIVTVCLE GLENILKVGE AEKNLGAGDV NNYAQMIDDA
501: EGLEKIENLQ SHDNTEIYEK AVKMLESYWL EEEDEVMPSG DNAQNGFNFG SQQNSVPSGG FNFG

Best Arabidopsis Sequence Match ( AT3G06720.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS

Arabidopsis Description

IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.