Factsheet for HORVU2Hr1G016300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0688300-01	Rice	cytosol	78.95	77.92
TraesCS2B01G112400.2	Wheat	cytosol	94.3	76.24
TraesCS2D01G096200.1	Wheat	cytosol	93.86	75.89
TraesCS2A01G097100.1	Wheat	cytosol	93.42	75.67
KXG36990	Sorghum	cytosol	76.54	61.99
Zm00001d022536_P008	Maize	cytosol	76.97	61.8
VIT_14s0060g00930.t01	Wine grape	cytosol	51.75	44.11
PGSC0003DMT400007130	Potato	cytosol	50.22	42.88
HORVU3Hr1G034750.5	Barley	cytosol	50.0	42.78
AT1G09270.1	Thale cress	cytosol	50.22	42.57
Solyc01g100720.2.1	Tomato	nucleus	49.56	42.32
CDX94988	Canola	cytosol	49.34	41.67
Bra018570.1-P	Field mustard	cytosol	49.34	41.51
CDY31102	Canola	plasma membrane	49.34	41.51
CDX93514	Canola	cytosol	49.34	41.51
CDY32165	Canola	cytosol	49.12	41.33
KRG99893	Soybean	cytosol	38.6	40.18
HORVU1Hr1G022750.2	Barley	plasma membrane	49.56	40.07
KRG99898	Soybean	cytosol	38.6	39.91
KRG99853	Soybean	cytosol, plastid	38.6	35.99
KRG99895	Soybean	cytosol, plastid	38.6	35.99
KRG96699	Soybean	cytosol	37.28	35.12
KRH68429	Soybean	cytosol, plastid	39.47	34.48
KRG99088	Soybean	cytosol	32.24	33.03
GSMUA_Achr5P27180_001	Banana	cytosol	32.46	31.97
KRG96700	Soybean	cytosol	34.43	30.97
Bra030765.1-P	Field mustard	cytosol	49.12	29.71
HORVU3Hr1G025640.2	Barley	plastid	23.9	20.8

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	EnsemblPlantsGene:HORVU2Hr1G016300	EnsemblPlants:HORVU2Hr1G016300.1	InterPro:IPR000225
InterPro:IPR011989	InterPro:Importing_su_alpha	UniProt:M0Z953	PFAM:PF00514	PFAM:PF16186	PIRSF:PIRSF005673
PFscan:PS50176	PANTHER:PTHR23316	PANTHER:PTHR23316:SF17	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0002958C8A
SEG:seg	:	:	:	:	:

Description

Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:M0Z953]

Coordinates

chrchr2H:-:37480982..37483961

Molecular Weight (calculated)

49733.6 Da

IEP (calculated)

4.223

GRAVY (calculated)

0.058

Length

456 amino acids

Sequence
(BLAST)

001: MVDKVWSDDT TSQLEATVQF RKLLSDGKNS TMIKIIRADV LPRFAEFLSR QRLPQLQMEA AWVLTNIAAS DYTLLVAECG AVPRLVELLD SPNANIRHQA
101: LWALGNIAAD MPSCREIVLD HGAVTPLLAQ FKEDMKVSVL RTATWALSNL CFGKLPAEVQ VKPILEIISL LIHSADEKIL ADACWALYYI CDGVEGGIQD
201: ALDAGVCPQL VKLLMHASAN ILLPVITSLA RISAGDDTQV QVIIENGILP CLTQLLARNY PKIIKKQTCL IVSNITAGSK DQIQAVIDAD VMNHVIVLLK
301: TSETDLKKEA AWAISNAASG GSSDQIQYLV SRGCLEPLCN VLKYQDVDLV YTCLEGLQNI LEEGETGRQG NECATNPYAQ FILENGGLDN LEDLQDFDND
401: AVYKLAMKLL ERYWDEEVSD EANLTASKDS PAENVEAVPE DAAPPPVAAP SVDGTE

Best Arabidopsis Sequence Match ( AT1G09270.1 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.