Factsheet for GSMUA_Achr5P27180_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P24150_001	Banana	cytosol	56.59	49.43
GSMUA_Achr8P06540_001	Banana	cytosol	56.37	49.15
GSMUA_Achr1P14770_001	Banana	cytosol	55.94	49.05
GSMUA_Achr8P22290_001	Banana	cytosol	55.72	46.82
GSMUA_Achr5P27090_001	Banana	cytosol	55.08	46.79
KRG96699	Soybean	cytosol	42.55	40.7
KRH68429	Soybean	cytosol, plastid	44.28	39.27
KRG99893	Soybean	cytosol	36.29	38.36
KRG99898	Soybean	cytosol	35.85	37.64
KRG99853	Soybean	cytosol, plastid	38.66	36.61
KRG99895	Soybean	cytosol, plastid	38.66	36.61
KRG99088	Soybean	cytosol	32.83	34.16
KRG96700	Soybean	cytosol	37.37	34.12
Os07t0688300-01	Rice	cytosol	33.26	33.33
HORVU2Hr1G016300.1	Barley	cytosol	31.97	32.46
KXG36990	Sorghum	cytosol	37.58	30.91
TraesCS2D01G096200.1	Wheat	cytosol	37.58	30.85
TraesCS2B01G112400.2	Wheat	cytosol	37.37	30.67
TraesCS2A01G097100.1	Wheat	cytosol	36.93	30.37
Zm00001d022536_P008	Maize	cytosol	36.93	30.11
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, nucleus, plastid	20.73	18.43

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3
InterPro:Armadillo	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	EnsemblPlantsGene:GSMUA_Achr5G27180_001	EnsemblPlants:GSMUA_Achr5P27180_001
EnsemblPlants:GSMUA_Achr5T27180_001	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB
InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	UniProt:M0T243	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186
PIRSF:PIRSF005673	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371
UniParc:UPI000296CE36	:	:	:	:	:

Description

Importin subunit alpha [Source:GMGC_GENE;Acc:GSMUA_Achr5G27180_001]

Coordinates

chr5:+:27741435..27747624

Molecular Weight (calculated)

51171.0 Da

IEP (calculated)

6.023

GRAVY (calculated)

0.042

Length

463 amino acids

Sequence
(BLAST)

001: MSLRPTTRAE ARKKSYKVAV DAEEARWRRE NVLVEIRKSK REENLNKKRC EAGPHHLSPP PTHACGMKRT NSLVILQIDN LSEMAEGAYY EDPAVPSSVI
101: TQFRRLLSDE CNILVEQGAP IEEVVKAGIV PRVVEFILRH ETPLPQHGCF ANIASGMLEN TQVVIDNGAV PKFAALALAN IAGDSLTCRD FVLSVGTALP
201: VLQRLIHLND EEVLVDACWA ISHLSHGSKD RIQAVIEAGV CPKLVELLSH PSHKVLVPAL RTLGNIVTGN DVQTQIMIKN LALPRLLQIL TSSYDNYIKQ
301: EVCGVISNIT AGNSNQIQAV IDANIVSPLV QLLQHAEFSV KKVAFWAISN AIHGELFSSC PLYRFLVSQG CIEPLCDLLA YPAPSINAIC MECLDKILEV
401: GEANKHLGIT AGRNLYAQMI CDCDGFNKIE SLVAHDNIVI YKMAVNILKR FWVDDEEDMQ DFD

Best Arabidopsis Sequence Match ( AT1G02690.1 )
(BLAST)

001: MSYKPSAKTE VRRNRYKVSV DADEGRRRRE DNMVEIRKNK REENLQKKRR EGFNPSMASQ PGQDFSSSLP TETRLENIQQ MIAGVMSEDR DLQLEATASF
101: RRLLSIERNP PINEVVQSGV VPHIVQFLSR DDFTQLQFEA AWALTNIASG TSENTRVIID SGAVPLFVKL LSSASEEVRE QAVWALGNVA GDSPKCRDHV
201: LSCEAMMSLL AQFHEHSKLS MLRNATWTLS NFCRGKPQPA FEQTKAALPA LERLLHSTDE EVLTDASWAL SYLSDGTNEK IQTVIDAGVI PRLVQLLAHP
301: SPSVLIPALR TIGNIVTGDD IQTQAVISSQ ALPGLLNLLK NTYKKSIKKE ACWTISNITA GNTSQIQEVF QAGIIRPLIN LLEIGEFEIK KEAVWAISNA
401: TSGGNHDQIK FLVSQGCIRP LCDLLPCPDP RVVTVTLEGL ENILKVGEAE KNLGNTGNDN LYAQMIEDAD GLDKIENLQS HDNNEIYEKA VKILESYWAA
501: DDEEEDIGGV DAPENVQSSG FQFGNQSGNA PTGGFNFG

Arabidopsis Description

IMPA-6Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:F4HXL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.