CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
nucleus 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99895	Soybean	cytosol, plastid	100.0	100.0
KRG99893	Soybean	cytosol	88.75	99.09
KRG99898	Soybean	cytosol	88.96	98.64
KRG99088	Soybean	cytosol	48.67	53.48
KRH50772	Soybean	cytosol, endoplasmic reticulum	47.03	50.77
Solyc01g100720.2.1	Tomato	nucleus	55.01	50.37
PGSC0003DMT400007130	Potato	cytosol	54.81	50.19
KRG96699	Soybean	cytosol	49.49	50.0
VIT_14s0060g00930.t01	Wine grape	cytosol	54.4	49.72
Bra018570.1-P	Field mustard	cytosol	53.37	48.16
CDX93514	Canola	cytosol	53.37	48.16
KRH68429	Soybean	cytosol, plastid	51.33	48.08
CDX94988	Canola	cytosol	52.97	47.96
AT1G09270.1	Thale cress	cytosol	52.76	47.96
CDY31102	Canola	plasma membrane	52.97	47.79
KRG92948	Soybean	nucleus	51.74	47.56
KRH11998	Soybean	endoplasmic reticulum	51.53	47.46
CDY32165	Canola	cytosol	52.56	47.42
KRH33847	Soybean	nucleus	51.53	47.37
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	51.33	47.27
KRH02317	Soybean	cytosol	51.12	47.17
KRG96743	Soybean	nucleus	51.12	46.99
KRH68461	Soybean	nucleus	50.72	46.62
KRG96700	Soybean	cytosol	43.35	41.81
GSMUA_Achr5P27180_001	Banana	cytosol	36.61	38.66
HORVU2Hr1G016300.1	Barley	cytosol	35.99	38.6
Os07t0688300-01	Rice	cytosol	35.58	37.66
Bra030765.1-P	Field mustard	cytosol	52.97	34.35
KXG36990	Sorghum	cytosol	39.06	33.93
TraesCS2D01G096200.1	Wheat	cytosol	38.85	33.69
TraesCS2B01G112400.2	Wheat	cytosol	38.45	33.33
TraesCS2A01G097100.1	Wheat	cytosol	38.24	33.21
Zm00001d022536_P008	Maize	cytosol	38.45	33.1
KRH19830	Soybean	cytosol, plastid	25.36	23.98
KRH32422	Soybean	plastid	8.59	20.9

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100786446	EntrezGene:102668055	EntrezGene:106796830	MapMan:23.5.1.3	EMBL:ACUP02011327
EMBL:ACUP02011340	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_18G175400
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005654	GO:GO:0005737
GO:GO:0005829	GO:GO:0006606	GO:GO:0006607	GO:GO:0006810	GO:GO:0008139	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	UniProt:I1N2F6	InterPro:IPR000225	InterPro:IPR011989
InterPro:Importing_su_alpha	EnsemblPlants:KRG99853	ProteinID:KRG99853	ProteinID:KRG99853.1	ProteinID:KRG99895.1	PFAM:PF00514
PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PANTHER:PTHR23316	PANTHER:PTHR23316:SF17	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI000294C9B5	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:41656794..41660162

Molecular Weight (calculated)

54714.6 Da

IEP (calculated)

4.946

GRAVY (calculated)

-0.124

Length

489 amino acids

Sequence
(BLAST)

001: MSLQPGSSSA SEKRKRSYHS RTDPYKDTLL SKRRESFAVY SKEELLEDIP VMKQRLWSES AAEQFEGTIH FRKLLANGHP PIDEVIKADV VPRIVEFLES
101: DGLHQLQFEA LWVLTNIASG TSQHKRAVVD HGAVPKLVKL LSPTNNYDDV REQAVWVLGN IAFDSPCYSD LILNEHALLP LLSLLNPPSP ILSMLRITTW
201: TLSNLVRGKP PVTLEQVKTL MPVLKTLIHN SDEEVVSDAC WALFYISDVS SDTTKTIVEA EFCVKLVDLL TNSSLTVIVP VLRTLGNIVA GDDAQTQLTI
301: DKGLITGLSK LLLISRDKEQ IYKETCWTIS NITAGNGAQI QAIIDAHIIP VLVAIVIYRK DCEIDLKKEV AWAISNATRG SHDQIRYLVD QRCIQALCDL
401: LAYPNSEIVS NCLEGLENIL VVGEVDKDID RGNSFAERVD KCDGWGMIEN LKSHDKKEIK ERAARIFKTF WAEDDLVEDT DLQDDLGRG

Best Arabidopsis Sequence Match ( AT1G09270.1 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.