CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50772	Soybean	cytosol, endoplasmic reticulum	82.64	96.69
KRH11998	Soybean	endoplasmic reticulum	95.09	94.92
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	94.15	93.97
VIT_05s0077g01430.t01	Wine grape	cytosol	91.32	91.49
Solyc01g060470.2.1	Tomato	extracellular	89.25	89.25
PGSC0003DMT400038784	Potato	cytosol	89.06	89.22
KRH33847	Soybean	nucleus	87.92	87.59
KRG92948	Soybean	nucleus	87.92	87.59
KRH68461	Soybean	nucleus	85.47	85.15
KRG96743	Soybean	nucleus	85.47	85.15
AT4G16143.2	Thale cress	cytosol	85.85	85.05
AT3G06720.2	Thale cress	cytosol	84.53	84.21
CDY34430	Canola	cytosol	84.15	84.15
CDY32215	Canola	cytosol	83.96	83.96
Bra033534.1-P	Field mustard	cytosol	83.96	83.96
CDY09716	Canola	cytosol	84.72	83.93
CDY52043	Canola	cytosol	83.96	83.33
Bra012741.1-P	Field mustard	cytosol	56.04	83.19
CDY22779	Canola	cytosol	83.77	83.15
Bra038043.1-P	Field mustard	cytosol	83.77	83.15
CDX90544	Canola	cytosol	84.53	82.96
Bra012740.1-P	Field mustard	cytosol	23.96	80.38
Zm00001d042015_P001	Maize	cytosol	21.13	67.47
AT5G49310.1	Thale cress	cytosol	64.91	66.28
Zm00001d040153_P004	Maize	cytosol	20.38	59.02
KRG96699	Soybean	cytosol	49.25	53.93
KRG99893	Soybean	cytosol	44.15	53.42
KRG99898	Soybean	cytosol	43.77	52.61
KRG99895	Soybean	cytosol, plastid	47.17	51.12
KRG99853	Soybean	cytosol, plastid	47.17	51.12
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.36	50.83
KRH68429	Soybean	cytosol, plastid	49.62	50.38
KRG99088	Soybean	cytosol	38.87	46.29
KRG96700	Soybean	cytosol	40.57	42.41
Zm00001d024033_P002	Maize	plastid	15.09	36.87
KRH19830	Soybean	cytosol, plastid	28.87	29.59
KRH32422	Soybean	plastid	11.13	29.35

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	EntrezGene:100792804	MapMan:23.5.1.3	EMBL:ACUP02010302	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G031000	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829
GO:GO:0006606	GO:GO:0006607	GO:GO:0006810	GO:GO:0008139	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0061608	UniProt:I1MRN6	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989
InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	ProteinID:KRH02316.1	EnsemblPlants:KRH02317
ProteinID:KRH02317	ProteinID:KRH02317.1	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673
PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371
UniParc:UPI0001D65268	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:2281783..2287155

Molecular Weight (calculated)

58573.9 Da

IEP (calculated)

4.773

GRAVY (calculated)

-0.248

Length

530 amino acids

Sequence
(BLAST)

001: MSLRPNARTE IRRNRYKVAV DADEGRRRRE DNMVEIRKSK REESLLKKRR EGLQAQQQFP APLQNSTVDK KLESLPAMVA GVWSDDNSIQ LEATTQFRKL
101: LSIERSPPIE EVIQAGVVPR FVEFLVREDF PQLQFEAAWA LTNIASGTSE NTKVVIDHGA VPIFVKLLSS PSDDVREQAV WALGNVAGDS PRCRDLVLSQ
201: GALVPLLAQL NEHAKLSMLR NATWTLSNFC RGKPQPPFEQ VRPALPALER LVFSNDEEVL TDACWALSYL SDGTNDKIQA VIEAGVCARL VQLLIHPSPS
301: VLIPALRTVG NIVTGDDMQT QCIINHGALP CLLNLLTNNH KKSIKKEACW TISNITAGNK EQIQTVIEAG LVAPLVNLLQ NAEFDIKKEA AWAISNATSG
401: GIHEQIKYLV SQGCIKPLCD LLVCPDPRIV TVCLEGLENI LKVGEAEKSL GNTGDVNEYA QMIDDAEGLE KIENLQSHDN NEIYEKAVKI LETYWLEEED
501: ETLPSGDGAQ PGFNFGNNEL PVPSGGFNFS

Best Arabidopsis Sequence Match ( AT3G06720.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS

Arabidopsis Description

IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.