CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32215	Canola	cytosol	99.25	99.25
CDY09716	Canola	cytosol	94.15	93.27
CDY22779	Canola	cytosol	93.77	93.07
AT4G16143.2	Thale cress	cytosol	93.58	92.71
CDX90544	Canola	cytosol	94.34	92.59
CDY52043	Canola	cytosol	93.21	92.51
VIT_05s0077g01430.t01	Wine grape	cytosol	85.47	85.63
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	84.72	84.56
KRH11998	Soybean	endoplasmic reticulum	84.72	84.56
KRH50772	Soybean	cytosol, endoplasmic reticulum	72.08	84.33
KRH02317	Soybean	cytosol	84.15	84.15
Solyc01g060470.2.1	Tomato	extracellular	83.58	83.58
PGSC0003DMT400038784	Potato	cytosol	83.4	83.55
CDY31102	Canola	plasma membrane	74.34	72.69
CDX94988	Canola	cytosol	73.77	72.41
CDY32165	Canola	cytosol	73.96	72.32
CDX93514	Canola	cytosol	73.77	72.14
CDY01921	Canola	cytosol	70.38	70.24
CDX97257	Canola	cytosol	70.19	70.06
CDY64806	Canola	cytosol	66.04	67.57
CDX89948	Canola	cytosol	66.42	67.56
CDX90948	Canola	cytosol	65.47	66.99
Zm00001d042015_P001	Maize	cytosol	20.94	66.87
CDY05638	Canola	cytosol	64.53	64.17
CDY33917	Canola	cytosol	64.34	64.1
CDY05194	Canola	cytosol	57.55	56.8
CDY27746	Canola	cytosol	57.92	56.64
Zm00001d040153_P004	Maize	cytosol	19.43	56.28
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.98	49.72
CDY15260	Canola	cytosol	65.66	44.9
Zm00001d024033_P002	Maize	plastid	13.96	34.1
CDY55698	Canola	cytosol, plastid	29.25	29.81
CDY04878	Canola	plastid	29.25	29.75
CDY10407	Canola	cytosol	26.23	28.14
CDX70330	Canola	cytosol, extracellular	13.02	26.44

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	GO:A0A078H7C1	UniProt:A0A078H7C1	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	EnsemblPlants:CDY34430	ProteinID:CDY34430	ProteinID:CDY34430.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	EnsemblPlantsGene:GSBRNA2T00056516001	InterPro:IPR000225	InterPro:IPR002652
InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	PFAM:PF00514
PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316
PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0004EEFD72	SEG:seg	:

Description

BnaC01g22030DImportin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A078H7C1]

Coordinates

chrLK032334:-:70443..74197

Molecular Weight (calculated)

58297.4 Da

IEP (calculated)

4.778

GRAVY (calculated)

-0.259

Length

530 amino acids

Sequence
(BLAST)

001: MSLRPNARTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKTK REESLLKKRR EGLQATQLPQ VTSAASSVEK KLESLPSMVG GVWSDDRSLQ LEATTQFRKL
101: LSIERSPPIE EVIGAGVVPR FVDFLMREDY PQLQFEAAWA LTNIASGTSE HTKVVIQHDA VPIFVQLLAS QSDDVREQAV WALGNVAGDS PQCRDLVLSK
201: GALLPLLSQL NEHAKLSMLR NATWTLSNFC RGKPQPPFDQ VRPALPALER LIHSTDEEVL TDACWALSYL SDGTNDKIQS VIEAGVVPRL VELLQHPSPS
301: VLIPALRSIG NIVTGDDAQT QCVISHGALL CLLSLLTQNH KKSIKKEACW TISNITAGNR DQIQAVCEAG LIAPLVNLLQ NAEFDIKKEA AWAVSNATSG
401: GSADQIKYMV DQGVVKPLCD LLVCPDPRII TVCLEGLENI LKVGEAEKVT GNTGDANYYA QLIDDAEGLE KIENLQSHDN SEIYEKAVKI LETYWLEEED
501: ETLPPGDESA QGFQFGGSDA AAPPGGFNFK

Best Arabidopsis Sequence Match ( AT3G06720.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS

Arabidopsis Description

IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.