CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89948	Canola	cytosol	60.13	89.44
AT1G02690.2	Thale cress	cytosol	50.45	72.54
CDY01921	Canola	cytosol	47.35	69.11
CDX97257	Canola	cytosol	47.23	68.93
VIT_07s0005g01100.t01	Wine grape	cytosol	46.71	68.43
TraesCS3A01G172000.1	Wheat	golgi, nucleus	45.42	67.18
TraesCS3D01G178500.1	Wheat	cytosol	45.42	67.18
Solyc06g009750.2.1	Tomato	nucleus	45.55	66.98
PGSC0003DMT400018802	Potato	cytosol	45.42	66.79
KXG32187	Sorghum	cytosol	45.29	66.48
Os01t0253300-01	Rice	cytosol	44.9	66.16
HORVU3Hr1G034750.5	Barley	cytosol	45.42	66.04
CDY32215	Canola	cytosol	45.03	65.85
CDY34430	Canola	cytosol	44.9	65.66
Zm00001d040274_P001	Maize	cytosol	44.77	65.6
CDY22779	Canola	cytosol	45.16	65.54
Zm00001d008345_P003	Maize	cytosol	44.77	65.47
CDY52043	Canola	cytosol	45.03	65.36
CDY09716	Canola	cytosol	45.03	65.23
CDY64806	Canola	cytosol	43.35	64.86
CDX90544	Canola	cytosol	45.03	64.63
CDX90948	Canola	cytosol	43.1	64.48
TraesCS3B01G202800.2	Wheat	cytosol	44.13	63.69
CDX93514	Canola	cytosol	42.06	60.15
CDX94988	Canola	cytosol	41.81	60.0
CDY31102	Canola	plasma membrane	41.94	59.96
CDY32165	Canola	cytosol	41.68	59.59
CDY05638	Canola	cytosol	39.1	56.85
CDY33917	Canola	cytosol	38.97	56.77
CDY05194	Canola	cytosol	35.23	50.84
CDY27746	Canola	cytosol	35.1	50.18
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	10.32	44.2
PGSC0003DMT400076768	Potato	cytosol, extracellular, mitochondrion, plastid	4.39	38.2
CDY55698	Canola	cytosol, plastid	19.74	29.42
CDY04878	Canola	plastid	19.61	29.17
CDY10407	Canola	cytosol	17.42	27.33
CDX70330	Canola	cytosol, extracellular	8.9	26.44

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	GO:A0A078FLE3	UniProt:A0A078FLE3	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	EnsemblPlants:CDY15260	ProteinID:CDY15260	ProteinID:CDY15260.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150
GO:GO:0008565	GO:GO:0061608	EnsemblPlantsGene:GSBRNA2T00085460001	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989
InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186
PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF53	SMART:SM00185	SUPFAM:SSF48371
UniParc:UPI0004EB15C8	SEG:seg	:	:	:	:

Description

BnaC05g01390DBnaC05g01390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLE3]

Coordinates

chrLK032052:+:730382..734394

Molecular Weight (calculated)

86288.9 Da

IEP (calculated)

5.221

GRAVY (calculated)

-0.494

Length

775 amino acids

Sequence
(BLAST)

001: MSLKPSARTE VRRNMYKVSV DADEGRRRRE GDMVEIRKNK REENLQKKRR EGLTARFAQK GHDLYSYERL ENITQLVAGV NSDDRSLQLE ATIGIRKLLS
101: VDHSPPIDEV IQSGVVPRLV HFLSSVVDFS ELQFEAAWAL TNIASGTSDN TEVIIDSGAI PLFIELFASP CFEVREQAVW AVGNVAGDSP KFRDFVLRCD
201: AMRPLLAQFN EHTKPSMLRN AAWTLSNFCR GKPAPALEQT KPALPVLERL LHSNDDEVLT DACWALSYLS DGNDEKIQTV INAGVIPSLV PLLAHHLPSV
301: LIPALRTIGN IVTGDDMLTQ EVLNHQALPR LLPILTSTYK RSIKKEACWV ISNITAGNTS QIQQVIEAGI IQPLIYMLHT AEFEIKKEAV WAVSNLTSGG
401: NHDQIKFLVD QGCIKPLCDL LTCPDPLAVT VILEALENIL KVGEAEMNQG NTGGFNIYVQ MVDDAEGLEK IENLQSHDNN DIYEKAVKIL SSYWTEEDDN
501: EHDALDDNGF TFGNQSGNAS TARTHRNIVK KKKKKMMQSR LLAFASAARS RVRPVAQSRL AFGSSTSGRA ADPELHSGND GADPAVYPRD PEGMDDVANP
601: KTAAEEIVDE QPRSSLEQQP LNPPKSPRAT AHKLESTPVG RPSEPNFQQK RRRSTEASPP SLDCASCVSL DEGEEEERRR RENETESDKE YYAHHKASPL
701: SEIEFADTRK PITQATDGTA YAAGKDVIGW LPEQLDTAEE ALQRATMIFK RNAERGDPET FPHSRILREM RGEWF

Best Arabidopsis Sequence Match ( AT1G02690.1 )
(BLAST)

001: MSYKPSAKTE VRRNRYKVSV DADEGRRRRE DNMVEIRKNK REENLQKKRR EGFNPSMASQ PGQDFSSSLP TETRLENIQQ MIAGVMSEDR DLQLEATASF
101: RRLLSIERNP PINEVVQSGV VPHIVQFLSR DDFTQLQFEA AWALTNIASG TSENTRVIID SGAVPLFVKL LSSASEEVRE QAVWALGNVA GDSPKCRDHV
201: LSCEAMMSLL AQFHEHSKLS MLRNATWTLS NFCRGKPQPA FEQTKAALPA LERLLHSTDE EVLTDASWAL SYLSDGTNEK IQTVIDAGVI PRLVQLLAHP
301: SPSVLIPALR TIGNIVTGDD IQTQAVISSQ ALPGLLNLLK NTYKKSIKKE ACWTISNITA GNTSQIQEVF QAGIIRPLIN LLEIGEFEIK KEAVWAISNA
401: TSGGNHDQIK FLVSQGCIRP LCDLLPCPDP RVVTVTLEGL ENILKVGEAE KNLGNTGNDN LYAQMIEDAD GLDKIENLQS HDNNEIYEKA VKILESYWAA
501: DDEEEDIGGV DAPENVQSSG FQFGNQSGNA PTGGFNFG

Arabidopsis Description

IMPA-6Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:F4HXL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.