Factsheet for VIT_07s0005g01100.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0780g00010.t01
VIT_05s0077g02310.t01
VIT_07s0129g01050.t01
VIT_09s0002g05150.t01
VIT_09s0002g06790.t01
VIT_09s0018g01880.t01
VIT_11s0016g04610.t01
VIT_11s0037g00330.t01
VIT_11s0052g00300.t01
VIT_12s0028g00200.t01
VIT_15s0046g03180.t01
VIT_17s0000g01360.t01
VIT_17s0000g01560.t01
VIT_18s0001g09850.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02150.1	VIT_12s0028g00200.t01	AT1G06510.1	21798944
AT4G02150.1	VIT_09s0002g06790.t01	AT1G52560.1	21798944
AT4G02150.1	VIT_07s0129g01050.t01	AT2G23290.1	21798944
AT4G02150.1	VIT_18s0001g09850.t01	AT2G23290.1	21798944
AT4G02150.1	VIT_11s0037g00330.t01	AT2G24020.1	21798944
AT4G02150.1	VIT_15s0046g03180.t01	AT2G45820.1	21798944
AT4G02150.1	VIT_09s0002g05150.t01	AT3G15540.1	21798944
AT4G02150.1	VIT_09s0018g01880.t01	AT3G21215.1	21798944
AT4G02150.1	VIT_17s0000g01360.t01	AT3G48550.1	21798944
AT4G02150.1	VIT_05s0077g02310.t01	AT4G15900.1	9765207
AT4G02150.1	VIT_17s0000g01560.t01	AT4G24840.1	21798944
AT4G02150.1	VIT_11s0016g04610.t01	AT5G19960.1	21798944
AT4G02150.1	VIT_00s0780g00010.t01	AT5G47810.1	21798944
AT4G02150.1	VIT_11s0052g00300.t01	AT5G57120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0077g01430.t01	Wine grape	cytosol	87.33	87.33
VIT_14s0060g01510.t01	Wine grape	cytosol	85.26	85.58
PGSC0003DMT400018802	Potato	cytosol	82.23	82.54
Solyc06g009750.2.1	Tomato	nucleus	82.04	82.35
KXG32187	Sorghum	cytosol	81.85	82.01
Zm00001d040274_P001	Maize	cytosol	81.85	81.85
Os01t0253300-01	Rice	cytosol	81.1	81.56
TraesCS3D01G178500.1	Wheat	cytosol	80.72	81.49
TraesCS3A01G172000.1	Wheat	golgi, nucleus	80.72	81.49
Zm00001d008345_P003	Maize	cytosol	81.29	81.13
HORVU3Hr1G034750.5	Barley	cytosol	80.72	80.11
TraesCS3B01G202800.2	Wheat	cytosol	78.64	77.47
AT4G02150.1	Thale cress	cytosol	75.8	75.52
VIT_14s0060g00930.t01	Wine grape	cytosol	75.99	75.14
AT1G02690.2	Thale cress	cytosol	75.8	74.4
VIT_00s0183g00040.t01	Wine grape	cytosol	22.12	74.05
CDY01921	Canola	cytosol	73.72	73.45
Bra008559.1-P	Field mustard	cytosol	73.35	73.07
CDX97257	Canola	cytosol	73.35	73.07
Bra033342.1-P	Field mustard	cytosol	69.38	70.44
CDX89948	Canola	cytosol	69.19	70.25
CDY64806	Canola	cytosol	68.62	70.08
CDX90948	Canola	cytosol	68.24	69.69
Bra000891.1-P	Field mustard	cytosol	67.86	69.31
VIT_15s0021g00390.t01	Wine grape	cytosol	6.05	59.26
VIT_00s0183g00210.t01	Wine grape	cytosol	27.6	50.0
CDY15260	Canola	cytosol	68.43	46.71
PGSC0003DMT400076768	Potato	cytosol, extracellular, mitochondrion, plastid	6.43	38.2
VIT_08s0040g02290.t01	Wine grape	cytosol	29.87	30.56

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	EntrezGene:100255493	wikigene:100255493	MapMan:23.5.1.3	UniProt:A5ARC5
EMBL:AM432887	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	ProteinID:CAN75951
ProteinID:CAN75951.1	ProteinID:CBI36918	ProteinID:CBI36918.3	EMBL:FN596502	GO:GO:0003674	GO:GO:0003676
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006259	GO:GO:0006606	GO:GO:0006607	GO:GO:0006810	GO:GO:0008139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008565	GO:GO:0009987	GO:GO:0015031	GO:GO:0015074
GO:GO:0061608	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB
InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	EntrezGene:LOC100255493	wikigene:LOC100255493	PFAM:PF00514	PFAM:PF01749
PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF53
SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI000151F32A	ArrayExpress:VIT_07s0005g01100	EnsemblPlantsGene:VIT_07s0005g01100	EnsemblPlants:VIT_07s0005g01100.t01
unigene:Vvi.5033	RefSeq:XP_002274422	RefSeq:XP_002274422.1	SEG:seg	:	:

Description

Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A5ARC5]

Coordinates

chr7:-:3650600..3656883

Molecular Weight (calculated)

58596.8 Da

IEP (calculated)

4.977

GRAVY (calculated)

-0.289

Length

529 amino acids

Sequence
(BLAST)

001: MSLRPSARTE VRRNRYKVAV DAEEGRRRRE DNLVEIRKNK REESLQKKRR EGLQAQQFTT PVSASTFERK LESLPAMVAG VWSEDSNLQL EATTYFRKLL
101: SIERSPPINE VIQSGVVPRL VEFLGRDDFP QLQFEAAWAL TNIASGTSEN TKVVIDHGAV PIFVKLLGSQ NDDVREQAVW ALGNVAGDSP KCRDLVLGHG
201: ALMPLMAQFN EHAKLSMLRN ATWTLSNFCR GKPQPQFEQT KPALPALERL IHSNDEEVLT DACWALSYLS DGTNDKIQAV IEAGVCPRLV ELLLHPSPSV
301: LIPALRTVGN IVTGDDIQTQ CIINYGALPC LLNLLSHNYK KSIKKEACWT ISNITAGNKD QIQSVIEAGI IPPLIYLLQN AEFEIKKEAA WAISNATSGG
401: THDQIKLLVS QGCIKPLCDL LICPDPRIVT VCLEGLENIL KVGEADKSLG HTDVNQFAQA IDDADGLEKI ENLQSHDNTE IYEKAVKILE TYWLEEDEEP
501: LPPGDASQSE FHFGGNDHPP VPPGGFNFG

Best Arabidopsis Sequence Match ( AT4G16143.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ

Arabidopsis Description

IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.