Factsheet for VIT_11s0052g00300.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g01100.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57120.1	VIT_07s0005g01100.t01	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02764	Soybean	nucleus	22.74	29.68
Solyc07g008330.2.1	Tomato	nucleus	25.39	27.98
CDY52493	Canola	plastid	22.08	27.03
KRH19114	Soybean	nucleus	22.3	27.01
Bra035650.1-P	Field mustard	nucleus, plastid	22.3	26.79
CDY32901	Canola	plastid	21.85	26.47
AT5G57120.1	Thale cress	nucleus	18.98	26.06
Os12t0613500-01	Rice	nucleus	25.61	25.89
PGSC0003DMT400051236	Potato	nucleus	23.18	25.74
CDY53983	Canola	nucleus	17.66	24.39
TraesCS5A01G040600.1	Wheat	nucleus, plastid	22.74	20.81
TraesCS5B01G041800.1	Wheat	nucleus	22.52	20.65
TraesCS5D01G047700.1	Wheat	nucleus	22.3	20.36
KXG23990	Sorghum	plastid	24.5	20.22
Zm00001d041495_P005	Maize	plastid	23.84	19.08
HORVU5Hr1G009830.3	Barley	nucleus	21.85	18.82
GSMUA_Achr7P07940_001	Banana	nucleus	21.19	17.27

Protein Annotations

MapMan:35.2	ProteinID:CCB44677	ProteinID:CCB44677.1	ncoils:Coil	UniProt:F6GXJ1	EMBL:FN594964
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	InterPro:IPR006594	InterPro:LisH	PFAM:PF05022	PFscan:PS50896
PANTHER:PTHR23216	SMART:SM00667	InterPro:SRP40_C	UniParc:UPI00021091F6	ArrayExpress:VIT_11s0052g00300	EnsemblPlantsGene:VIT_11s0052g00300
EnsemblPlants:VIT_11s0052g00300.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:17539420..17544551

Molecular Weight (calculated)

50522.6 Da

IEP (calculated)

8.351

GRAVY (calculated)

-1.238

Length

453 amino acids

Sequence
(BLAST)

001: MNNLSNKTSK TLNPCQKKTL LHSSILHYLQ RSGFSKTLKY FQREAPLEND NGNGCSLDLE EVYYKSLETC DDASTNWNNC KEQDLEKSDK KDGEDNCVAV
101: VETVSKKKKK RSEESNRKAV VNESGTANKF CNAKNSEKTL TKDIVPPLNV KSKEKKSKKI YDPLDEGTEQ VSSEISKEPV DETVCEPQLD ESSKKGKDKK
201: KKSKLVSQPH VDNAEPHQLD TQPGENEENP KGLAAAEGRE ATDSEANIKS KDKKKKKLEK EKSKRTDSKS SNSQTVEEDA LDEDDKVSKK RKRLACEESN
301: SQPADKVVVE KSKRQKTESS KESDGIKLLK EVKESLGSDL DEGDKGKVAK QLDVQANGIL DKNGEKSTAR KQVKNQQNST EPKTVNAFQR VKIDEVEFAD
401: QRLQDNSYWA KGGADSGYGA KAQEILGQVR GRVQRSLEVA QGKPEDQTTA LFI

Best Arabidopsis Sequence Match ( AT5G57120.2 )
(BLAST)

001: MGNESKTSAL ESEQKALLLR SVAQYLERCG FSKCFKKLLS EAEIEKKELN TSLPDLEEIF SEFLNKRDHE AAANGNTEAN VVEAVENVKK DKKKKKNKET
101: KVEVTEEEKV KETDAVIEDG VKEKKKKKSK SKSVEADDDK EKVSKKRKRS EPEETKEETE DDDEESKRRK KEENVVENDE GVQETPVKET ETKENGNAEK
201: SETKSTNQKS GKGLSNSKEP KKPFQRVNVD EIVYTENSNS YYSKGGAEIG YGLKAQEVLG QVRGRDFRHE KTKKKRGSYR GGLIDQESHS TKFNNSDDEE

Arabidopsis Description

AT5g57120/MUL3_6 [Source:UniProtKB/TrEMBL;Acc:Q9LU74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.