Factsheet for Bra035650.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000891.1-P
Bra008559.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57120.1	Bra000891.1-P	AT4G02150.1	21798944
AT5G57120.1	Bra008559.1-P	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32901	Canola	plastid	81.17	81.82
AT5G57120.1	Thale cress	nucleus	45.36	51.82
KRH19114	Soybean	nucleus	36.87	37.17
KRH02764	Soybean	nucleus	33.42	36.31
Solyc07g008330.2.1	Tomato	nucleus	36.34	33.33
PGSC0003DMT400051236	Potato	nucleus	35.28	32.6
Os12t0613500-01	Rice	nucleus	36.6	30.8
TraesCS5D01G047700.1	Wheat	nucleus	34.22	26.01
TraesCS5A01G040600.1	Wheat	nucleus, plastid	33.95	25.86
TraesCS5B01G041800.1	Wheat	nucleus	33.42	25.51
KXG23990	Sorghum	plastid	37.14	25.5
HORVU5Hr1G009830.3	Barley	nucleus	34.48	24.71
VIT_11s0052g00300.t01	Wine grape	nucleus	26.79	22.3
Zm00001d041495_P005	Maize	plastid	31.83	21.2
GSMUA_Achr7P07940_001	Banana	nucleus	30.24	20.5

Protein Annotations

EnsemblPlants:Bra035650.1	EnsemblPlants:Bra035650.1-P	EnsemblPlantsGene:Bra035650	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	InterPro:IPR006594
InterPro:LisH	InterPro:SRP40_C	ncoils:Coil	PANTHER:PTHR23216	PFAM:PF05022	PFscan:PS50896
SEG:seg	SMART:SM00667	UniParc:UPI00025460BA	UniProt:M4F3K0	MapMan:35.2	:

Description

AT5G57120 (E=2e-044) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 90949 Blast hits to 45608 proteins in 1620 species: Archae - 300; Bacteria - 8281; Metazoa - 37603; Fungi - 8095; Plants - 3374; Viruses - 548; Other Eukaryotes - 32748 (source: NCBI BLink).

Coordinates

chrA02:+:6940236..6941804

Molecular Weight (calculated)

42831.5 Da

IEP (calculated)

7.415

GRAVY (calculated)

-1.216

Length

377 amino acids

Sequence
(BLAST)

001: MPKTLATEPS SRITLNPALL ALTPRQVLLI SRPVMAKESK ALSLKSEQKA LLLRSIAQYL ERCGFSKCFK KLLSEAEIEK KELDSALPDL EEVYGVFLNK
101: SNLEAVEVKD ESGDQKKEVG EVSAMEGVEK VKKEKKKKKK KVEVTEEEKV KETDAEVEDG VEEKKIKKKK NKEPKVEVAK EEEVKETDGE IEDGVKEKKK
201: KKKSKATDAE TLLADEEKVS KKRKRSEPEE ETKEQREDDD DDSKRRKKEE IVAEDEMNVQ ETPVKQQNDV QENGNFETKS TDKKSGKGLS NSKEPKKPFQ
301: RVNVEEVVFT DDRLKDNSYW AKGGADSGYG AKAQEVLGQV RGRGFRHEKT KKKRGSYRGG EIDLQSHSVK FEYSDDE

Best Arabidopsis Sequence Match ( AT5G57120.1 )
(BLAST)

001: MGNESKTSAL ESEQKALLLR SVAQYLERCG FSKCFKKLLS EAEIEKKELN TSLPDLEEIF SEFLNKRDHE AAANGNTEAN VVEAVENVKK DKKKKKNKET
101: KVEVTEEEKV KETDAVIEDG VKEKKKKKET KVKVTEEEKV KETDAVIEDG VKEKKKKKSK SKSVEADDDK EKVSKKRKRS EPEETKEETE DDDEESKRRK
201: KEENVVENDE GVQETPVKET ETKENGNAEK SETKSTNQKS GKGLSNSKEP KKPFQRVNVD EIVYTENSNS YYSKGGAEIG YGLKAQEVLG QVRGRDFRHE
301: KTKKKRGSYR GGLIDQESHS TKFNNSDDEE

Arabidopsis Description

AT5g57120/MUL3_6 [Source:UniProtKB/TrEMBL;Acc:Q9LU74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.