Factsheet for Solyc07g008330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g009750.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57120.1	Solyc06g009750.2.1	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051236	Potato	nucleus	88.08	88.73
KRH02764	Soybean	nucleus	31.14	36.89
CDY52493	Canola	plastid	32.85	36.49
Bra035650.1-P	Field mustard	nucleus, plastid	33.33	36.34
CDY32901	Canola	plastid	32.6	35.83
AT5G57120.1	Thale cress	nucleus	27.49	34.24
CDY53983	Canola	nucleus	26.76	33.54
KRH19114	Soybean	nucleus	30.41	33.42
Os12t0613500-01	Rice	nucleus	33.09	30.36
TraesCS5A01G040600.1	Wheat	nucleus, plastid	31.87	26.46
TraesCS5B01G041800.1	Wheat	nucleus	31.39	26.11
TraesCS5D01G047700.1	Wheat	nucleus	31.39	26.01
VIT_11s0052g00300.t01	Wine grape	nucleus	27.98	25.39
HORVU5Hr1G009830.3	Barley	nucleus	31.63	24.71
KXG23990	Sorghum	plastid	32.12	24.04
GSMUA_Achr7P07940_001	Banana	nucleus	32.36	23.92
Zm00001d041495_P005	Maize	plastid	28.47	20.67

Protein Annotations

EnsemblPlants:Solyc07g008330.2.1	EnsemblPlantsGene:Solyc07g008330.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	InterPro:IPR006594	InterPro:LisH
InterPro:SRP40_C	PANTHER:PTHR23216	PFAM:PF05022	PFscan:PS50896	SEG:seg	UniParc:UPI000276B3FE
UniProt:K4CBV2	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr7:-:3114775..3120434

Molecular Weight (calculated)

45744.9 Da

IEP (calculated)

9.239

GRAVY (calculated)

-1.204

Length

411 amino acids

Sequence
(BLAST)

001: MLETKTRQQQ NPSTSSSSTA AAAALLLAFK PRQVVLAESS KSNLVMAKKE QNQENKSGLQ QSILHYLHLN GFSKTLKYFL KETQTEGDSW KSCSLSLEDL
101: YGKYVSNSTD NDTISKGDKE PVLCEDGMKG NNISSNDADS QEKVSKKKKK KRSEDNDIAV PDVSHLESVD KSMKNGAAAQ EVLAVDKADL PLKKQKEKKK
201: KKTEENPESV DPIDNDNNDL TAETTKKDKK KKSKEKSGAT DSKDSKKRKR LASDENANQG VDGVETEESK RRKTEVLEET KALCTDNGIE QNGEVVEANS
301: NGNNKDELNN SAKQKSSRKD FNGSAEPKTV NAFQRVKIDQ VEFKDDRLKD NSYWAKDGAD IGYGAKAQEV LGQVKGRDFR HEKTKKKRGS YRGGIIDLQS
401: HSVKFNYSDE E

Best Arabidopsis Sequence Match ( AT5G57120.1 )
(BLAST)

001: MGNESKTSAL ESEQKALLLR SVAQYLERCG FSKCFKKLLS EAEIEKKELN TSLPDLEEIF SEFLNKRDHE AAANGNTEAN VVEAVENVKK DKKKKKNKET
101: KVEVTEEEKV KETDAVIEDG VKEKKKKKET KVKVTEEEKV KETDAVIEDG VKEKKKKKSK SKSVEADDDK EKVSKKRKRS EPEETKEETE DDDEESKRRK
201: KEENVVENDE GVQETPVKET ETKENGNAEK SETKSTNQKS GKGLSNSKEP KKPFQRVNVD EIVYTENSNS YYSKGGAEIG YGLKAQEVLG QVRGRDFRHE
301: KTKKKRGSYR GGLIDQESHS TKFNNSDDEE

Arabidopsis Description

AT5g57120/MUL3_6 [Source:UniProtKB/TrEMBL;Acc:Q9LU74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.