Factsheet for Solyc06g009750.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g094370.2.1
Solyc02g081170.2.1
Solyc02g092930.1.1
Solyc03g112920.1.1
Solyc03g120380.2.1
Solyc03g123840.2.1
Solyc04g015200.2.1
Solyc05g048820.2.1
Solyc07g008330.2.1
Solyc08g006660.1.1
Solyc09g010620.1.1
Solyc10g007730.2.1
Solyc10g017540.2.1
Solyc12g009980.1.1
Solyc12g042830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02150.1	Solyc10g007730.2.1	AT1G06510.1	21798944
AT4G02150.1	Solyc12g042830.1.1	AT1G52560.1	21798944
AT4G02150.1	Solyc02g092930.1.1	AT2G23290.1	21798944
AT4G02150.1	Solyc12g009980.1.1	AT2G24020.1	21798944
AT4G02150.1	Solyc01g094370.2.1	AT2G45820.1	21798944
AT4G02150.1	Solyc05g048820.2.1	AT2G45820.1	21798944
AT4G02150.1	Solyc10g017540.2.1	AT2G45820.1	21798944
AT4G02150.1	Solyc03g120380.2.1	AT3G15540.1	21798944
AT4G02150.1	Solyc03g123840.2.1	AT3G21215.1	21798944
AT4G02150.1	Solyc03g112920.1.1	AT3G48550.1	21798944
AT4G02150.1	Solyc09g010620.1.1	AT4G15900.1	9765207
AT4G02150.1	Solyc02g081170.2.1	AT4G22240.1	21798944
AT4G02150.1	Solyc08g006660.1.1	AT4G24840.1	21798944
AT4G02150.1	Solyc04g015200.2.1	AT5G47810.1	21798944
AT4G02150.1	Solyc07g008330.2.1	AT5G57120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018802	Potato	cytosol	98.86	98.86
VIT_07s0005g01100.t01	Wine grape	cytosol	82.35	82.04
Solyc01g060470.2.1	Tomato	extracellular	80.46	80.0
Os01t0253300-01	Rice	cytosol	79.32	79.47
TraesCS3D01G178500.1	Wheat	cytosol	78.18	78.63
TraesCS3A01G172000.1	Wheat	golgi, nucleus	78.18	78.63
KXG32187	Sorghum	cytosol	78.75	78.6
Zm00001d040274_P001	Maize	cytosol	78.75	78.45
Zm00001d008345_P003	Maize	cytosol	78.56	78.11
HORVU3Hr1G034750.5	Barley	cytosol	77.99	77.11
TraesCS3B01G202800.2	Wheat	cytosol	75.71	74.3
Solyc08g041890.2.1	Tomato	nucleus	79.89	72.96
Solyc01g100720.2.1	Tomato	nucleus	73.06	72.1
CDY01921	Canola	cytosol	72.3	71.75
AT4G02150.1	Thale cress	cytosol	72.3	71.75
CDX97257	Canola	cytosol	71.92	71.37
Bra008559.1-P	Field mustard	cytosol	71.92	71.37
AT1G02690.2	Thale cress	cytosol	71.73	70.13
Bra033342.1-P	Field mustard	cytosol	67.36	68.14
CDX90948	Canola	cytosol	66.79	67.95
CDY64806	Canola	cytosol	66.79	67.95
CDX89948	Canola	cytosol	67.17	67.95
Bra000891.1-P	Field mustard	cytosol	66.41	67.57
CDY15260	Canola	cytosol	66.98	45.55
Solyc10g084270.1.1	Tomato	cytosol	28.08	28.46

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	EMBL:AF017252	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Arm_3	InterPro:Armadillo	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643
GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006606	GO:GO:0006607	GO:GO:0006810
GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225
InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha
UniProt:O22478	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176
PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc06g009750.2
EnsemblPlants:Solyc06g009750.2.1	UniParc:UPI000012D5FC	SEG:seg	:	:	:

Description

Importin subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:O22478]

Coordinates

chr6:+:3705492..3711608

Molecular Weight (calculated)

58608.9 Da

IEP (calculated)

4.739

GRAVY (calculated)

-0.210

Length

527 amino acids

Sequence
(BLAST)

001: MSLRPNSRTE ARRSRYKVAV DAEEGRRRRE DNMVEIRKNK REENLLKKRR EGLLQAQQFP STAAVSHLDK KLETLPELIA GVWSDDSSLQ LECTTQFRKL
101: LSIERNPPIE EVIQSGVVPR FVEFLARDDY PQLQFEAAWA LTNIASGTSE NTKVVIDYGS VPIFIRLLSS PSDDVREQAV WALGNIAGDS PKYRDLVLGH
201: GALVALLAQF NEQAKLSMLR NATWTLSNFC RGKPQPLFEQ TKAALPTLGR LIHSNDEEVL TDACWALSYL SDGTNDKIQA VIEAGVCSRL VELLLHSSPS
301: VLIPALRTVG NIVTGDDIQT QVMIDHHALP CLVNLLTQNY KKSIKKEACW TISNITAGNR NQIQIVIEAG IIAPLVYLLQ NAEFEIKKEA AWAISNATSG
401: GNHDQIKFLV SQGCIKPLCD LLVCPDPRIV TVCLEGLENI LKIGEADKDL GNTEGVNVYA QLIDEAEGLE KIENLQSHDN TEIYEKAVKI LETYWLEEED
501: VPVSLNEDQF EFGGADISLP SGGFNFS

Best Arabidopsis Sequence Match ( AT3G06720.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS

Arabidopsis Description

IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.