Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
plastid: 22908117 plastid: 26371478 plastid: 28183294 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
28183294
doi
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400043112 | Potato | extracellular | 95.09 | 95.09 |
GSMUA_Achr7P05510_001 | Banana | cytosol | 56.75 | 74.3 |
CDY71809 | Canola | plastid | 41.41 | 71.81 |
KRH11500 | Soybean | plastid | 63.5 | 67.65 |
KRH36517 | Soybean | plastid | 63.19 | 66.03 |
CDX82925 | Canola | plastid | 64.11 | 65.93 |
CDX79139 | Canola | plastid | 63.19 | 64.58 |
CDY16684 | Canola | plastid | 62.88 | 64.47 |
Bra013602.1-P | Field mustard | plastid | 62.88 | 64.26 |
Bra029481.1-P | Field mustard | plastid | 62.27 | 63.84 |
CDY21291 | Canola | plastid | 61.04 | 62.97 |
CDX90850 | Canola | plastid | 60.74 | 62.66 |
AT4G22240.1 | Thale cress | plastid | 59.51 | 62.58 |
AT4G04020.1 | Thale cress | plastid | 60.12 | 61.64 |
GSMUA_Achr3P12980_001 | Banana | plastid | 60.43 | 61.56 |
Bra000785.1-P | Field mustard | plastid | 60.74 | 60.55 |
Os09t0133600-01 | Rice | plastid | 57.98 | 59.25 |
Zm00001d003470_P001 | Maize | plastid | 57.36 | 58.8 |
TraesCS5B01G162100.1 | Wheat | plastid | 55.83 | 58.33 |
TraesCS5A01G164600.1 | Wheat | plastid | 55.52 | 57.64 |
EES12270 | Sorghum | plastid | 58.28 | 57.58 |
Zm00001d025574_P001 | Maize | extracellular | 55.21 | 57.32 |
GSMUA_Achr4P20110_001 | Banana | plastid | 52.45 | 54.81 |
CDX94540 | Canola | plastid | 22.39 | 48.99 |
HORVU0Hr1G012460.1 | Barley | cytosol, mitochondrion, nucleus | 54.29 | 47.45 |
Solyc08g076480.2.1 | Tomato | plastid | 38.96 | 36.92 |
Solyc08g005220.2.1 | Tomato | plastid | 38.34 | 29.9 |
Protein Annotations
EMBL:DQ310151 | EnsemblPlants:Solyc02g081170.2.1 | EnsemblPlantsGene:Solyc02g081170.2 | InterPro:PAP/fibrillin_dom | PANTHER:PTHR31906 | PANTHER:PTHR31906:SF7 |
PFAM:PF04755 | UniParc:UPI0000DA7921 | UniProt:Q0ZPA3 | MapMan:35.1 | : | : |
Description
Plastid lipid associated protein CHRC [Source:UniProtKB/TrEMBL;Acc:Q0ZPA3]
Coordinates
chr2:-:45232902..45234795
Molecular Weight (calculated)
35651.4 Da
IEP (calculated)
4.966
GRAVY (calculated)
-0.232
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MASISSLNQI PCRTLQITSQ YSKPTSKIST LPISSTNFPS KTELHRAISV KEFTYPKPKF TAQATNYDKE DEWGPEVEKI SPGGVAVVDE EPPKEPSEIE
101: LLKKQLADSF YGTNRGLSAS SETRAEIVEL ITQLESKNPN PAPTEALTLL NGKWILAYTS FSGLFPLLSR GNLLLVRVEE ISQTIDSESF TVQNSVVFAG
201: PLATTSISTN AKFEVRSPKR VQIKFEEGII GTPQLTDSIV LPENVEFLGQ KIDLSPFKGL ITSVQDTASS VAKSISSQPP IKFPISNNNA QSWLLTTYLD
301: DELRISRGDA GSVFVLIKEG SPLLKP
101: LLKKQLADSF YGTNRGLSAS SETRAEIVEL ITQLESKNPN PAPTEALTLL NGKWILAYTS FSGLFPLLSR GNLLLVRVEE ISQTIDSESF TVQNSVVFAG
201: PLATTSISTN AKFEVRSPKR VQIKFEEGII GTPQLTDSIV LPENVEFLGQ KIDLSPFKGL ITSVQDTASS VAKSISSQPP IKFPISNNNA QSWLLTTYLD
301: DELRISRGDA GSVFVLIKEG SPLLKP
001: MATVPLFTQF PCKTLNPSSS NTKHQSKSPI LLPINSINRR SEIGVSVHRP DFKIRATDID DEWGQDGVER VFASSSTVSV ADKAIESVEE TERLKRSLAD
101: SLYGTDRGLS VSSDTRAEIS ELITQLESKN PTPAPNEALF LLNGKWILAY TSFVGLFPLL SRRIEPLVKV DEISQTIDSD SFTVQNSVRF AGPFSTTSFS
201: TNAKFEIRSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIK GLLTSVQDTA SSVARTISNQ PPLKFSLPSD NTQSWLLTTY LDKDLRISRG
301: DGGSVYVLIK EGSSLLNP
101: SLYGTDRGLS VSSDTRAEIS ELITQLESKN PTPAPNEALF LLNGKWILAY TSFVGLFPLL SRRIEPLVKV DEISQTIDSD SFTVQNSVRF AGPFSTTSFS
201: TNAKFEIRSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIK GLLTSVQDTA SSVARTISNQ PPLKFSLPSD NTQSWLLTTY LDKDLRISRG
301: DGGSVYVLIK EGSSLLNP
Arabidopsis Description
PAP1Probable plastid-lipid-associated protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81439]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.