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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
plastid: 22908117
plastid: 26371478
plastid: 28183294
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 28183294 doi
R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400043112 Potato extracellular 95.09 95.09
GSMUA_Achr7P05510_001 Banana cytosol 56.75 74.3
CDY71809 Canola plastid 41.41 71.81
KRH11500 Soybean plastid 63.5 67.65
KRH36517 Soybean plastid 63.19 66.03
CDX82925 Canola plastid 64.11 65.93
CDX79139 Canola plastid 63.19 64.58
CDY16684 Canola plastid 62.88 64.47
Bra013602.1-P Field mustard plastid 62.88 64.26
Bra029481.1-P Field mustard plastid 62.27 63.84
CDY21291 Canola plastid 61.04 62.97
CDX90850 Canola plastid 60.74 62.66
AT4G22240.1 Thale cress plastid 59.51 62.58
AT4G04020.1 Thale cress plastid 60.12 61.64
GSMUA_Achr3P12980_001 Banana plastid 60.43 61.56
Bra000785.1-P Field mustard plastid 60.74 60.55
Os09t0133600-01 Rice plastid 57.98 59.25
Zm00001d003470_P001 Maize plastid 57.36 58.8
TraesCS5B01G162100.1 Wheat plastid 55.83 58.33
TraesCS5A01G164600.1 Wheat plastid 55.52 57.64
EES12270 Sorghum plastid 58.28 57.58
Zm00001d025574_P001 Maize extracellular 55.21 57.32
GSMUA_Achr4P20110_001 Banana plastid 52.45 54.81
CDX94540 Canola plastid 22.39 48.99
HORVU0Hr1G012460.1 Barley cytosol, mitochondrion, nucleus 54.29 47.45
Solyc08g076480.2.1 Tomato plastid 38.96 36.92
Solyc08g005220.2.1 Tomato plastid 38.34 29.9
Protein Annotations
EMBL:DQ310151EnsemblPlants:Solyc02g081170.2.1EnsemblPlantsGene:Solyc02g081170.2InterPro:PAP/fibrillin_domPANTHER:PTHR31906PANTHER:PTHR31906:SF7
PFAM:PF04755UniParc:UPI0000DA7921UniProt:Q0ZPA3MapMan:35.1::
Description
Plastid lipid associated protein CHRC [Source:UniProtKB/TrEMBL;Acc:Q0ZPA3]
Coordinates
chr2:-:45232902..45234795
Molecular Weight (calculated)
35651.4 Da
IEP (calculated)
4.966
GRAVY (calculated)
-0.232
Length
326 amino acids
Sequence
(BLAST)
001: MASISSLNQI PCRTLQITSQ YSKPTSKIST LPISSTNFPS KTELHRAISV KEFTYPKPKF TAQATNYDKE DEWGPEVEKI SPGGVAVVDE EPPKEPSEIE
101: LLKKQLADSF YGTNRGLSAS SETRAEIVEL ITQLESKNPN PAPTEALTLL NGKWILAYTS FSGLFPLLSR GNLLLVRVEE ISQTIDSESF TVQNSVVFAG
201: PLATTSISTN AKFEVRSPKR VQIKFEEGII GTPQLTDSIV LPENVEFLGQ KIDLSPFKGL ITSVQDTASS VAKSISSQPP IKFPISNNNA QSWLLTTYLD
301: DELRISRGDA GSVFVLIKEG SPLLKP
Best Arabidopsis Sequence Match ( AT4G04020.1 )
(BLAST)
001: MATVPLFTQF PCKTLNPSSS NTKHQSKSPI LLPINSINRR SEIGVSVHRP DFKIRATDID DEWGQDGVER VFASSSTVSV ADKAIESVEE TERLKRSLAD
101: SLYGTDRGLS VSSDTRAEIS ELITQLESKN PTPAPNEALF LLNGKWILAY TSFVGLFPLL SRRIEPLVKV DEISQTIDSD SFTVQNSVRF AGPFSTTSFS
201: TNAKFEIRSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIK GLLTSVQDTA SSVARTISNQ PPLKFSLPSD NTQSWLLTTY LDKDLRISRG
301: DGGSVYVLIK EGSSLLNP
Arabidopsis Description
PAP1Probable plastid-lipid-associated protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81439]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.