Factsheet for HORVU0Hr1G012460.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
AGP50794
HORVU0Hr1G012460.1
HORVU1Hr1G062980.2
HORVU1Hr1G077590.4
HORVU2Hr1G051410.1
HORVU2Hr1G123730.3
HORVU3Hr1G039500.1
HORVU3Hr1G097420.1
HORVU4Hr1G010810.1
HORVU4Hr1G012580.5
HORVU4Hr1G028100.1
HORVU5Hr1G015120.1
HORVU5Hr1G052630.2
HORVU5Hr1G064950.1
HORVU5Hr1G092770.2
HORVU5Hr1G122800.4
HORVU6Hr1G037290.1
HORVU7Hr1G065870.1
HORVU7Hr1G100990.2
HORVU7Hr1G122340.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	HORVU1Hr1G062980.2	AT1G18040.1	21798944
AT4G04020.1	HORVU3Hr1G039500.1	AT2G24570.1	21798944
AT4G04020.1	HORVU3Hr1G097420.1	AT2G24570.1	21798944
AT4G04020.1	HORVU4Hr1G012580.5	AT2G24570.1	21798944
AT4G04020.1	HORVU5Hr1G015120.1	AT2G24570.1	21798944
AT4G04020.1	HORVU5Hr1G052630.2	AT2G24570.1	21798944
AT4G04020.1	HORVU5Hr1G092770.2	AT2G24570.1	21798944
AT4G04020.1	HORVU5Hr1G122800.4	AT2G24570.1	21798944
AT4G04020.1	HORVU0Hr1G012460.1	AT4G04020.1	21798944
AT4G04020.1	HORVU1Hr1G077590.4	AT4G21070.1	16957774
AT4G04020.1	HORVU4Hr1G010810.1	AT4G21070.1	16957774
AT4G04020.1	HORVU0Hr1G012460.1	AT4G22240.1	24937144
AT4G22240.1	HORVU2Hr1G123730.3	AT3G61310.1	21798944
AT4G22240.1	HORVU7Hr1G122340.3	AT3G61310.1	21798944
AT4G22240.1	HORVU0Hr1G012460.1	AT4G04020.1	24937144
AT4G22240.1	HORVU0Hr1G012460.1	AT4G22240.1	24937144
AT4G22240.1	AGP50794	ATCG00810.1	24937144
AT4G22240.1	HORVU2Hr1G051410.1	ATCG00810.1	24937144
AT4G22240.1	HORVU4Hr1G028100.1	ATCG00810.1	24937144
AT4G22240.1	HORVU5Hr1G064950.1	ATCG00810.1	24937144
AT4G22240.1	HORVU6Hr1G037290.1	ATCG00810.1	24937144
AT4G22240.1	HORVU7Hr1G065870.1	ATCG00810.1	24937144
AT4G22240.1	HORVU7Hr1G100990.2	ATCG00810.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G162100.1	Wheat	plastid	69.97	83.65
TraesCS5A01G164600.1	Wheat	plastid	69.97	83.12
GSMUA_Achr7P05510_001	Banana	cytosol	49.06	73.49
Os09t0133600-01	Rice	plastid	60.59	70.85
Zm00001d025574_P001	Maize	extracellular	58.18	69.11
EES12270	Sorghum	plastid	60.32	68.18
Zm00001d003470_P001	Maize	plastid	57.37	67.3
CDY71809	Canola	plastid	31.9	63.3
GSMUA_Achr3P12980_001	Banana	plastid	52.55	61.25
KRH11500	Soybean	plastid	48.53	59.15
KRH36517	Soybean	plastid	49.33	58.97
GSMUA_Achr4P20110_001	Banana	plastid	46.65	55.77
PGSC0003DMT400043112	Potato	extracellular	47.72	54.6
Solyc02g081170.2.1	Tomato	plastid	47.45	54.29
Bra013602.1-P	Field mustard	plastid	46.11	53.92
CDX79139	Canola	plastid	46.11	53.92
CDY16684	Canola	plastid	45.84	53.77
CDX82925	Canola	plastid	45.58	53.63
Bra029481.1-P	Field mustard	plastid	45.58	53.46
CDY21291	Canola	plastid	45.04	53.16
CDX90850	Canola	plastid	45.04	53.16
AT4G22240.1	Thale cress	plastid	43.97	52.9
AT4G04020.1	Thale cress	plastid	44.77	52.52
Bra000785.1-P	Field mustard	plastid	45.31	51.68
CDX94540	Canola	plastid	14.75	36.91
HORVU1Hr1G050640.1	Barley	cytosol	33.24	31.55

Protein Annotations

EnsemblPlants:HORVU0Hr1G012460.1	EnsemblPlantsGene:HORVU0Hr1G012460	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF7	PFAM:PF04755
SEG:seg	UniParc:UPI000B4784E7	UniProt:A0A287E0A9	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchrUn:+:70965396..70969497

Molecular Weight (calculated)

40363.0 Da

IEP (calculated)

10.007

GRAVY (calculated)

-0.273

Length

373 amino acids

Sequence
(BLAST)

001: RDQRTSRQSH RTHLDTSTRL SSLQVPTAPR IKILRISEKR KKRKTVAEEE EHENRTELRA MAGVASLNAV SLSVPSPQVP PGASSARGRL LSPAARRFPS
101: LRAARRVVTA RAVPVDADDE WGKEPAEGGT AVAEAPSEAA ETAGELAALK QKLKAALYGT ERGLRASSET RAEVVELITQ LEARNPTPAP TEALTLLNGK
201: WILAYTSFSQ LFPLLGSGRL QALVKVDEIS QTIDSENFAV QNCIKFSGPL ASTSVSTNAK FEIRSPKRVQ IKFEEGIIGT PQLTDSIVLP EKFEFFGQNI
301: DLSPLSGIFT SIENAASSVA KTISGQPPLK IPFRSESAGS WLLTTYLDAE LRISRGDGSS IFVLFKEGSS LSI

Best Arabidopsis Sequence Match ( AT4G04020.1 )
(BLAST)

001: MATVPLFTQF PCKTLNPSSS NTKHQSKSPI LLPINSINRR SEIGVSVHRP DFKIRATDID DEWGQDGVER VFASSSTVSV ADKAIESVEE TERLKRSLAD
101: SLYGTDRGLS VSSDTRAEIS ELITQLESKN PTPAPNEALF LLNGKWILAY TSFVGLFPLL SRRIEPLVKV DEISQTIDSD SFTVQNSVRF AGPFSTTSFS
201: TNAKFEIRSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIK GLLTSVQDTA SSVARTISNQ PPLKFSLPSD NTQSWLLTTY LDKDLRISRG
301: DGGSVYVLIK EGSSLLNP

Arabidopsis Description

PAP1Probable plastid-lipid-associated protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81439]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.