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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:mitochondrion
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX71746
CDX79139
CDX82925
CDX89109
CDX90850
CDX91812
CDX94540
CDY16684
CDY21180
CDY21291
CDY28604
CDY42495
CDY48928
CDY51561
CDY58791
CDY71809

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G22240.1 CDX71746 AT3G61310.1 21798944
AT4G22240.1 CDX89109 AT3G61310.1 21798944
AT4G22240.1 CDY42495 AT3G61310.1 21798944
AT4G22240.1 CDY48928 AT3G61310.1 21798944
AT4G22240.1 CDY51561 AT3G61310.1 21798944
AT4G22240.1 CDY58791 AT3G61310.1 21798944
AT4G22240.1 CDX90850 AT4G04020.1 24937144
AT4G22240.1 CDX94540 AT4G04020.1 24937144
AT4G22240.1 CDY16684 AT4G04020.1 24937144
AT4G22240.1 CDY21291 AT4G04020.1 24937144
AT4G22240.1 CDY71809 AT4G04020.1 24937144
AT4G22240.1 CDX79139 AT4G22240.1 24937144
AT4G22240.1 CDX82925 AT4G22240.1 24937144
AT4G22240.1 CDX91812 ATCG00810.1 24937144
AT4G22240.1 CDY21180 ATCG00810.1 24937144
AT4G22240.1 CDY28604 ATCG00810.1 24937144
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra013602.1-P Field mustard plastid 95.61 95.61
CDX82925 Canola plastid 92.79 93.38
CDY71809 Canola plastid 48.28 81.91
AT4G22240.1 Thale cress plastid 76.18 78.39
CDY16684 Canola plastid 73.67 73.9
CDY21291 Canola plastid 71.79 72.47
CDX90850 Canola plastid 71.16 71.84
GSMUA_Achr7P05510_001 Banana cytosol 54.55 69.88
KRH11500 Soybean plastid 61.13 63.73
KRH36517 Soybean plastid 62.07 63.46
Solyc02g081170.2.1 Tomato plastid 64.58 63.19
PGSC0003DMT400043112 Potato extracellular 64.26 62.88
TraesCS5B01G162100.1 Wheat plastid 56.43 57.69
TraesCS5A01G164600.1 Wheat plastid 56.43 57.32
GSMUA_Achr3P12980_001 Banana plastid 57.37 57.19
CDX94540 Canola plastid 26.65 57.05
Os09t0133600-01 Rice plastid 55.8 55.8
Zm00001d003470_P001 Maize plastid 54.55 54.72
Zm00001d025574_P001 Maize extracellular 53.6 54.46
EES12270 Sorghum plastid 55.8 53.94
GSMUA_Achr4P20110_001 Banana plastid 50.47 51.6
HORVU0Hr1G012460.1 Barley cytosol, mitochondrion, nucleus 53.92 46.11
CDY31692 Canola plastid 38.24 33.89
CDX84202 Canola plastid 38.24 33.7
Protein Annotations
EnsemblPlants:CDX79139EnsemblPlantsGene:GSBRNA2T00131691001InterPro:PAP/fibrillin_domPANTHER:PTHR31906PANTHER:PTHR31906:SF7PFAM:PF04755
ProteinID:CDX79139ProteinID:CDX79139.1SEG:segUniParc:UPI0004EE9861MapMan:35.1:
Description
BnaA01g12060D
Coordinates
chrLK031816:-:2001187..2002381
Molecular Weight (calculated)
34617.1 Da
IEP (calculated)
4.407
GRAVY (calculated)
-0.109
Length
319 amino acids
Sequence
(BLAST)
001: MATVQFFNQF PCQTRVQSSA NSKPLSKPPS SLVPMSALTR RPSFPPGEFA VSRSDFRVRV IDAEDELDPE TSEGGGSALL MAEEAIESVE ETEVLKRSLV
101: DSLYGTDRGL SASSETRAEI GDLITQLESK NPTPAPTDAL FLLNGKWILA YTSFVGLFPL LSRGIVPLVK VDEISQTIDS DNFTVENSVL FAGPLATTSI
201: STNAKFEIRS PKRVQIKFEE GVIGTPQLTD SIEIPEYVEF LGQKIDLTPI RGLLTSVQDT ATSVARTISS QPPLKFSLPG DSAQSWLLTT YLDKDIRISR
301: GDGGSVFVLI KEGSPLLNP
Best Arabidopsis Sequence Match ( AT4G22240.1 )
(BLAST)
001: MATVQLSTQF SCQTRVSISP NSKSISKPPF LVPVTSIIHR PMISTGGIAV SPRRVFKVRA TDTGEIGSAL LAAEEAIEDV EETERLKRSL VDSLYGTDRG
101: LSASSETRAE IGDLITQLES KNPTPAPTEA LFLLNGKWIL AYTSFVNLFP LLSRGIVPLI KVDEISQTID SDNFTVQNSV RFAGPLGTNS ISTNAKFEIR
201: SPKRVQIKFE QGVIGTPQLT DSIEIPEYVE VLGQKIDLNP IRGLLTSVQD TASSVARTIS SQPPLKFSLP ADNAQSWLLT TYLDKDIRIS RGDGGSVFVL
301: IKEGSPLLNP
Arabidopsis Description
PAP2Probable plastid-lipid-associated protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49629]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.