CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71746
CDX79139
CDX82925
CDX89109
CDX90850
CDX91812
CDX94540
CDY16684
CDY21180
CDY21291
CDY28604
CDY42495
CDY48928
CDY51561
CDY58791
CDY71809

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22240.1	CDX71746	AT3G61310.1	21798944
AT4G22240.1	CDX89109	AT3G61310.1	21798944
AT4G22240.1	CDY42495	AT3G61310.1	21798944
AT4G22240.1	CDY48928	AT3G61310.1	21798944
AT4G22240.1	CDY51561	AT3G61310.1	21798944
AT4G22240.1	CDY58791	AT3G61310.1	21798944
AT4G22240.1	CDX90850	AT4G04020.1	24937144
AT4G22240.1	CDX94540	AT4G04020.1	24937144
AT4G22240.1	CDY16684	AT4G04020.1	24937144
AT4G22240.1	CDY21291	AT4G04020.1	24937144
AT4G22240.1	CDY71809	AT4G04020.1	24937144
AT4G22240.1	CDX79139	AT4G22240.1	24937144
AT4G22240.1	CDX82925	AT4G22240.1	24937144
AT4G22240.1	CDX91812	ATCG00810.1	24937144
AT4G22240.1	CDY21180	ATCG00810.1	24937144
AT4G22240.1	CDY28604	ATCG00810.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79139	Canola	plastid	93.38	92.79
Bra013602.1-P	Field mustard	plastid	89.91	89.34
CDY71809	Canola	plastid	48.27	81.38
AT4G22240.1	Thale cress	plastid	76.34	78.06
CDY16684	Canola	plastid	74.45	74.21
CDY21291	Canola	plastid	71.61	71.84
CDX90850	Canola	plastid	70.98	71.2
GSMUA_Achr7P05510_001	Banana	cytosol	55.2	70.28
Solyc02g081170.2.1	Tomato	plastid	65.93	64.11
KRH11500	Soybean	plastid	61.51	63.73
PGSC0003DMT400043112	Potato	extracellular	65.3	63.5
KRH36517	Soybean	plastid	62.15	63.14
CDX94540	Canola	plastid	27.76	59.06
GSMUA_Achr3P12980_001	Banana	plastid	58.04	57.5
Os09t0133600-01	Rice	plastid	57.1	56.74
TraesCS5B01G162100.1	Wheat	plastid	55.52	56.41
TraesCS5A01G164600.1	Wheat	plastid	55.84	56.37
Zm00001d003470_P001	Maize	plastid	54.89	54.72
Zm00001d025574_P001	Maize	extracellular	53.31	53.82
EES12270	Sorghum	plastid	55.84	53.64
GSMUA_Achr4P20110_001	Banana	plastid	52.05	52.88
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	53.63	45.58
CDY31692	Canola	plastid	39.43	34.72
CDX84202	Canola	plastid	39.12	34.25

Protein Annotations

EnsemblPlants:CDX82925	EnsemblPlantsGene:GSBRNA2T00138312001	InterPro:PAP/fibrillin_dom	PANTHER:PTHR31906	PANTHER:PTHR31906:SF7	PFAM:PF04755
ProteinID:CDX82925	ProteinID:CDX82925.1	SEG:seg	UniParc:UPI0004EF21CB	MapMan:35.1	:

Description

BnaC01g13750D

Coordinates

chrLK031830:-:1380787..1382016

Molecular Weight (calculated)

34587.0 Da

IEP (calculated)

4.520

GRAVY (calculated)

-0.112

Length

317 amino acids

Sequence
(BLAST)

001: MATVQFFNQF PCKTRVQSSA NSKPLSKPPS LVPTSAFTRR PLFSPGEFAV SRADFRVRVI DAEDEFDSER SEGGSALLMA EEAIESVEET EVLKRSLVDS
101: LYGTDRGLSA SSETRAEIGD LITQLESKNP TPAPTDALFL LNGKWILAYT SFVGLFPLLS RGIVPLVKVD EISQTIDSEN FTVENSVLFA GPLATTSIST
201: NAKFEIRSPK RVQIKFEEGV IGTPQLTDSI EIPEYVEFLG QKIDLTPIRG LLTSVQDTAT SVARTISSQP PLKFSLPGDN AQSWLLTTYL DKDIRISRGD
301: GGSVFVLIKE GSPLLNS

Best Arabidopsis Sequence Match ( AT4G22240.1 )
(BLAST)

001: MATVQLSTQF SCQTRVSISP NSKSISKPPF LVPVTSIIHR PMISTGGIAV SPRRVFKVRA TDTGEIGSAL LAAEEAIEDV EETERLKRSL VDSLYGTDRG
101: LSASSETRAE IGDLITQLES KNPTPAPTEA LFLLNGKWIL AYTSFVNLFP LLSRGIVPLI KVDEISQTID SDNFTVQNSV RFAGPLGTNS ISTNAKFEIR
201: SPKRVQIKFE QGVIGTPQLT DSIEIPEYVE VLGQKIDLNP IRGLLTSVQD TASSVARTIS SQPPLKFSLP ADNAQSWLLT TYLDKDIRIS RGDGGSVFVL
301: IKEGSPLLNP

Arabidopsis Description

PAP2Probable plastid-lipid-associated protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49629]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.