Factsheet for Os09t0133600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289
plastid: 27126603

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 27126603 doi

Y Wang, K Ji, S Shen, H Chen

Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. Electronic address: chenh@ibcas.ac.cn., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
CAA33935
Os02t0462800-01
Os02t0824300-01
Os04t0165200-01
Os04t0287400-01
Os04t0605100-01
Os04t0683900-01
Os05t0512000-01
Os07t0273150-00
Os08t0235800-00
Os08t0562300-01
Os09t0133600-01
Os12t0488300-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04020.1	Os02t0462800-01	AT2G24570.1	21798944
AT4G04020.1	Os04t0287400-01	AT2G24570.1	21798944
AT4G04020.1	Os04t0605100-01	AT2G24570.1	21798944
AT4G04020.1	Os08t0235800-00	AT2G24570.1	21798944
AT4G04020.1	Os09t0133600-01	AT4G04020.1	21798944
AT4G04020.1	Os05t0512000-01	AT4G21070.1	16957774
AT4G04020.1	Os09t0133600-01	AT4G22240.1	24937144
AT4G04020.1	Os04t0165200-01	AT5G22890.1	21798944
AT4G04020.1	Os08t0562300-01	AT5G22890.1	21798944
AT4G22240.1	Os02t0824300-01	AT3G61310.1	21798944
AT4G22240.1	Os04t0683900-01	AT3G61310.1	21798944
AT4G22240.1	Os09t0133600-01	AT4G04020.1	24937144
AT4G22240.1	Os09t0133600-01	AT4G22240.1	24937144
AT4G22240.1	CAA33935	ATCG00810.1	24937144
AT4G22240.1	Os07t0273150-00	ATCG00810.1	24937144
AT4G22240.1	Os12t0488300-00	ATCG00810.1	24937144

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003470_P001	Maize	plastid	76.18	76.42
GSMUA_Achr7P05510_001	Banana	cytosol	58.62	75.1
TraesCS5B01G162100.1	Wheat	plastid	72.73	74.36
Zm00001d025574_P001	Maize	extracellular	72.1	73.25
TraesCS5A01G164600.1	Wheat	plastid	72.1	73.25
EES12270	Sorghum	plastid	75.55	73.03
CDY71809	Canola	plastid	38.56	65.43
GSMUA_Achr3P12980_001	Banana	plastid	63.64	63.44
KRH11500	Soybean	plastid	58.93	61.44
HORVU0Hr1G012460.1	Barley	cytosol, mitochondrion, nucleus	70.85	60.59
KRH36517	Soybean	plastid	59.25	60.58
PGSC0003DMT400043112	Potato	extracellular	60.19	58.9
Solyc02g081170.2.1	Tomato	plastid	59.25	57.98
GSMUA_Achr4P20110_001	Banana	plastid	56.11	57.37
CDX82925	Canola	plastid	56.74	57.1
CDY16684	Canola	plastid	56.43	56.6
Bra029481.1-P	Field mustard	plastid	56.11	56.29
CDX79139	Canola	plastid	55.8	55.8
Bra013602.1-P	Field mustard	plastid	55.49	55.49
AT4G22240.1	Thale cress	plastid	53.92	55.48
CDX90850	Canola	plastid	54.55	55.06
CDY21291	Canola	plastid	54.23	54.75
AT4G04020.1	Thale cress	plastid	54.23	54.4
Bra000785.1-P	Field mustard	plastid	54.55	53.21
CDX94540	Canola	plastid	19.44	41.61
Os10t0575700-00	Rice	plastid	41.69	35.56

Protein Annotations

EMBL:AK099394	EMBL:AY224474	EnsemblPlants:Os09t0133600-01	EnsemblPlantsGene:Os09g0133600	EntrezGene:4346460	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:PAP/fibrillin_dom
PANTHER:PTHR31906	PANTHER:PTHR31906:SF7	PFAM:PF04755	ProteinID:BAD22310.1	ProteinID:BAT06961.1	RefSeq:XP_015612444.1
SEG:seg	UniParc:UPI0000377E2C	UniProt:Q6K439	MapMan:35.1	:	:

Description

PAP2Fibrillin-like protein. (Os09t0133600-01);PAP fibrillin family protein. (Os09t0133600-02)

Coordinates

chr9:+:2549092..2552715

Molecular Weight (calculated)

33921.3 Da

IEP (calculated)

4.745

GRAVY (calculated)

-0.041

Length

319 amino acids

Sequence
(BLAST)

001: MAGSSSLSTL SLCTQSPSPS PVASARLVAP AVLGFAGAPR FPTLRAAPRR LTARAVAGDA EDEWGKEPAA DQGGAAAAVA EAPADVPVTS EVAELKAKLK
101: EALYGTERGL RASSETRAEV VELITQLEAR NPTPAPTEAL TLLNGKWILA YTSFSQLFPL LGSGSLPQLV KVEEISQTID SENFTVQNCI KFSGPLATTS
201: VSTNAKFEVR SPKRVQIKFD EGIIGTPQLT DSIVLPEKFE LFGQNIDLTP LKGIFSSIEN AASSVARTIS GQPPLKIPIR TDNAESWLLT TYLDDELRIS
301: RGDGSSIFVL FKEGSTLLY

Best Arabidopsis Sequence Match ( AT4G04020.1 )
(BLAST)

001: MATVPLFTQF PCKTLNPSSS NTKHQSKSPI LLPINSINRR SEIGVSVHRP DFKIRATDID DEWGQDGVER VFASSSTVSV ADKAIESVEE TERLKRSLAD
101: SLYGTDRGLS VSSDTRAEIS ELITQLESKN PTPAPNEALF LLNGKWILAY TSFVGLFPLL SRRIEPLVKV DEISQTIDSD SFTVQNSVRF AGPFSTTSFS
201: TNAKFEIRSP KRVQIKFEQG VIGTPQLTDS IEIPESVEVL GQKIDLNPIK GLLTSVQDTA SSVARTISNQ PPLKFSLPSD NTQSWLLTTY LDKDLRISRG
301: DGGSVYVLIK EGSSLLNP

Arabidopsis Description

PAP1Probable plastid-lipid-associated protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81439]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.