Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 5
- plasma membrane 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
24083427
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os09t0133600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G21070.1 | Os09t0133600-01 | AT4G04020.1 | 16957774 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G010810.1 | Barley | cytosol | 3.34 | 70.21 |
| TraesCS1A01G329600.1 | Wheat | nucleus | 62.72 | 62.46 |
| TraesCS1D01G331700.1 | Wheat | nucleus | 60.28 | 61.85 |
| TraesCS1B01G343100.2 | Wheat | nucleus | 61.5 | 60.64 |
| EES18483 | Sorghum | nucleus | 60.28 | 59.74 |
| Zm00001d038667_P001 | Maize | nucleus | 54.0 | 58.0 |
| HORVU1Hr1G077590.4 | Barley | plastid | 58.87 | 57.47 |
| Bra037622.1-P | Field mustard | nucleus | 2.53 | 45.45 |
| GSMUA_Achr6P29980_001 | Banana | nucleus | 41.24 | 41.53 |
| CDX76414 | Canola | nucleus | 32.73 | 36.05 |
| Bra020883.1-P | Field mustard | nucleus | 32.73 | 35.97 |
| CDX82797 | Canola | nucleus | 32.73 | 35.85 |
| AT4G21070.1 | Thale cress | nucleus | 33.64 | 35.28 |
| CDX79031 | Canola | nucleus | 33.03 | 35.13 |
| CDY57063 | Canola | nucleus | 31.81 | 34.09 |
| Solyc08g023280.2.1 | Tomato | nucleus | 33.84 | 33.47 |
| Os04t0512400-01 | Rice | cytosol | 20.97 | 32.91 |
| PGSC0003DMT400013749 | Potato | nucleus | 33.33 | 31.13 |
| KRH11144 | Soybean | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 35.36 | 24.44 |
| Os05t0486600-01 | Rice | mitochondrion | 12.56 | 22.22 |
Protein Annotations
Description
OsBRCA1Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0512000-01)
Coordinates
chr5:-:25357253..25362761
Molecular Weight (calculated)
108703.0 Da
IEP (calculated)
8.922
GRAVY (calculated)
-0.683
Length
987 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTGSLEKM GRELKCPICL SLLSSAVSIS CNHVFCNDCL TESMKSTSSC PVCKVPFRRR EMRPAPHMDN LVSIFKSMEA AAGTNVVSTQ EAPVVKLADG
101: SDCVNSGKNS KRSQKSLTRK RKVTSEMEKN TAKDATASAS QPTTKPSFST NKRIQVKPFP ESETPIRAEK IMKPEEPKNN LNNDVEGKNK AVASGQPGSP
201: SLSPFFWLRE QEEQEGCTAE TLSETQSLDT PLRHNAPSFS DIKDSDDEIP LNTTPNSKAA ATELFDSEIF EWTQRPCSPE LYSTPLKKQS KAKSKLDQIE
301: EKGDEEDVHI GGSFDKLGNA SNAAQLVNTK ATKQKRKKTS PSNKNSAKLS NRAEPCIKKS DANQQGSNRR KSAALKSCQK SSSAVGRNTS GRRNKASSNS
401: KPIHGSSDNS PESYLPKEGL DVEAPDKPLS ERIQNLEKTS RRKGSARKLE MAGKTISDTT EKNSEPRSKR VRRMSDHAIA KPVEVPSGSG NETEIPQLHT
501: LTKGSIQRKS SNARRHSKVC GEQEGKNKLE NTTMTPIILH GKCQNKEAVC TAPSVRTASV KYKQAKFSEQ PDCFGTENFG NLQACPARNV LLKKCEVSTL
601: KVSCAFCQTD VITEESGEMV HYQNGKQVPA EFNGGANVVH SHKNCLEWAP DVYFEDDSAF NLTTELARSR RIKCACCGIK GAALGCFEMS CRRSFHFTCA
701: KLIPECRWDN ENFVMLCPLH RSTKLPNENS EQQKQPKRKT TLKGSSQIGS NQDCGNNWKW PSGSPQKWVL CCSSLSSSEK ELVSEFAKLA GVPISATWSP
801: NVTHVIASTD LSGACKRTLK FLMAILNGRW IVSIDWVKTC MECMEPIDEH KFEVATDVHG ITDGPRLGRC RVIDRQPKLF DSMRFYLHGD YTKSYRGYLQ
901: DLVVAAGGIV LQRKPVSRDQ QKLLDDSSDL LIVYSFENQD RAKSKAETKA ADRRQADAQA LACASGGRVV SSAWVIDSIA ACNLQPL
101: SDCVNSGKNS KRSQKSLTRK RKVTSEMEKN TAKDATASAS QPTTKPSFST NKRIQVKPFP ESETPIRAEK IMKPEEPKNN LNNDVEGKNK AVASGQPGSP
201: SLSPFFWLRE QEEQEGCTAE TLSETQSLDT PLRHNAPSFS DIKDSDDEIP LNTTPNSKAA ATELFDSEIF EWTQRPCSPE LYSTPLKKQS KAKSKLDQIE
301: EKGDEEDVHI GGSFDKLGNA SNAAQLVNTK ATKQKRKKTS PSNKNSAKLS NRAEPCIKKS DANQQGSNRR KSAALKSCQK SSSAVGRNTS GRRNKASSNS
401: KPIHGSSDNS PESYLPKEGL DVEAPDKPLS ERIQNLEKTS RRKGSARKLE MAGKTISDTT EKNSEPRSKR VRRMSDHAIA KPVEVPSGSG NETEIPQLHT
501: LTKGSIQRKS SNARRHSKVC GEQEGKNKLE NTTMTPIILH GKCQNKEAVC TAPSVRTASV KYKQAKFSEQ PDCFGTENFG NLQACPARNV LLKKCEVSTL
601: KVSCAFCQTD VITEESGEMV HYQNGKQVPA EFNGGANVVH SHKNCLEWAP DVYFEDDSAF NLTTELARSR RIKCACCGIK GAALGCFEMS CRRSFHFTCA
701: KLIPECRWDN ENFVMLCPLH RSTKLPNENS EQQKQPKRKT TLKGSSQIGS NQDCGNNWKW PSGSPQKWVL CCSSLSSSEK ELVSEFAKLA GVPISATWSP
801: NVTHVIASTD LSGACKRTLK FLMAILNGRW IVSIDWVKTC MECMEPIDEH KFEVATDVHG ITDGPRLGRC RVIDRQPKLF DSMRFYLHGD YTKSYRGYLQ
901: DLVVAAGGIV LQRKPVSRDQ QKLLDDSSDL LIVYSFENQD RAKSKAETKA ADRRQADAQA LACASGGRVV SSAWVIDSIA ACNLQPL
001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
Arabidopsis Description
BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.