Factsheet for Bra020883.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000785.1-P
Bra029481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21070.1	Bra000785.1-P	AT4G04020.1	16957774
AT4G21070.1	Bra029481.1-P	AT4G04020.1	16957774

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76414	Canola	nucleus	90.98	91.18
Bra037622.1-P	Field mustard	nucleus	5.35	87.27
AT4G21070.1	Thale cress	nucleus	63.7	60.79
HORVU4Hr1G010810.1	Barley	cytosol	2.78	53.19
Solyc08g023280.2.1	Tomato	nucleus	39.2	35.27
PGSC0003DMT400013749	Potato	nucleus	39.42	33.49
TraesCS1A01G329600.1	Wheat	nucleus	36.75	33.3
Os05t0512000-01	Rice	extracellular	35.97	32.73
HORVU1Hr1G077590.4	Barley	plastid	36.53	32.44
TraesCS1D01G331700.1	Wheat	nucleus	34.74	32.43
TraesCS1B01G343100.2	Wheat	nucleus	35.97	32.27
EES18483	Sorghum	nucleus	35.75	32.23
Zm00001d038667_P001	Maize	nucleus	31.96	31.23
GSMUA_Achr6P29980_001	Banana	nucleus	33.96	31.12
KRH11144	Soybean	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	39.31	24.72
Bra032532.1-P	Field mustard	nucleus	24.5	19.49

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
EnsemblPlantsGene:Bra020883	EnsemblPlants:Bra020883.1	EnsemblPlants:Bra020883.1-P	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR034732	InterPro:IPR036420	UniProt:M4DWI9	PFAM:PF00533	PFAM:PF13771	PFAM:PF13923
PFAM:PF16589	PIRSF:PIRSF001734	ScanProsite:PS00518	PFscan:PS50089	PFscan:PS50172	PFscan:PS51805
PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184	SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850
UniParc:UPI0002545C16	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

AT4G21070 (E=3e-181) ATBRCA1, BRCA1 | ATBRCA1; ubiquitin-protein ligase

Coordinates

chrA08:-:11465636..11469894

Molecular Weight (calculated)

98791.0 Da

IEP (calculated)

9.359

GRAVY (calculated)

-0.764

Length

898 amino acids

Sequence
(BLAST)

001: MGDDGATHLE KMGRELKCPI CLSLFNSAVS LTCNHVFCNA CIVKSMKVDA TCPVCKVPFH RREIRGAPHM DSLVSIYKNM EVASGVPMFV SQTKPSSPSE
101: KQKHVGDGSI EKGNGKKRQG SSKGRTSKKR GSRKTKETDV DSSGPIVMKP SSQTNKRVQL SQNHSSQSLT KSTESAEKLK DYTDRTVIRL NEHPSHDKEE
201: NLAPLFWLRD EVDGESSSQR TESDQLLDVT PVDVPSFSDL KDSDHDTPSK AVEQEKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKPLG KGEIDLPQRK
301: LSKDASSNQK RKAGSARKKV AKVRIGVSKE DHIASSAGEN IGEKQETSGT SGKSTRKDEN VKAKRATRNK GQTSEVQSGV KKSVEAEGKQ GRKKKRSSVK
401: VSAEHPVAVS NELSVGTENV GKGDQEPEKQ SPAEKPSLKK RRKSQTGDLS GRSEKKTSEK RSKLDSCATP SRVTQSRGKK ILSDELNQAG DRQDSTNKKP
501: SLGGSVHLRR CSGPPTNKFT CAFCQSSDET EASGKMSHYH KGEPVSADFS GGSNVIHVHK NCAEWAPNVY FNRRTAVNLD VELTRSQRIT CSCCGLKGAA
601: LGCYNESCKN SFHVTCAKLI PECRWDDKNF VMLCPLDASS KLPCEEASPK GRKRKRAPEG PLQAQTNQVS EKSDISELQR KPFHGLPKKM VLCCSGLTDE
701: ENSVISEFAE LSGVTVSRKW ERRVTHVIAS INENGACKRT LKFMMGILEG KWILSIDWIK ACMKNGECVS EEPYEISIDV HGTRQGPYIG RQRALNKEPK
801: LFNGLKFYMM GDFELAYKGY LQDMIVAAGG TILCRRPVCN DDNEASTIVV FNTEPSKKKT LTERRSDAEA LARSVNARAA SSSWVLDSIA GCQALDLM

Best Arabidopsis Sequence Match ( AT4G21070.1 )
(BLAST)

001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I

Arabidopsis Description

BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.