Factsheet for TraesCS1A01G329600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G164600.1
TraesCS5B01G162100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21070.1	TraesCS5A01G164600.1	AT4G04020.1	16957774
AT4G21070.1	TraesCS5B01G162100.1	AT4G04020.1	16957774

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G343100.2	Wheat	nucleus	91.93	91.01
TraesCS1D01G331700.1	Wheat	nucleus	87.59	90.23
HORVU4Hr1G010810.1	Barley	cytosol	4.04	85.11
HORVU1Hr1G077590.4	Barley	plastid	82.74	81.11
Os05t0512000-01	Rice	extracellular	62.46	62.72
EES18483	Sorghum	nucleus	60.44	60.14
Zm00001d038667_P001	Maize	nucleus	53.08	57.24
Bra037622.1-P	Field mustard	nucleus	3.13	56.36
GSMUA_Achr6P29980_001	Banana	nucleus	41.57	42.04
Bra020883.1-P	Field mustard	nucleus	33.3	36.75
CDX76414	Canola	nucleus	33.1	36.61
CDX82797	Canola	nucleus	32.9	36.18
AT4G21070.1	Thale cress	nucleus	33.91	35.71
CDY57063	Canola	nucleus	32.8	35.29
CDX79031	Canola	nucleus	32.59	34.81
Solyc08g023280.2.1	Tomato	nucleus	33.8	33.57
PGSC0003DMT400013749	Potato	nucleus	33.5	31.41
TraesCS2A01G384900.1	Wheat	nucleus	19.17	30.79
KRH11144	Soybean	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	34.11	23.67
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	12.61	19.0
TraesCS1A01G304700.1	Wheat	nucleus	14.63	17.84

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0000724	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006310	GO:GO:0006464	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009987	GO:GO:0010332	GO:GO:0016740	GO:GO:0019538	GO:GO:0071480
InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420	PFAM:PF00533
PFAM:PF13639	PFAM:PF13771	PFAM:PF16589	ScanProsite:PS00518	PFscan:PS50089	PFscan:PS50172
PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184	SMART:SM00292	SUPFAM:SSF52113
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1A01G329600	EnsemblPlants:TraesCS1A01G329600.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
TIGR:cd00027	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:518662107..518666892

Molecular Weight (calculated)

108699.0 Da

IEP (calculated)

9.099

GRAVY (calculated)

-0.657

Length

991 amino acids

Sequence
(BLAST)

001: MADMGSLEKM GRELKCPICL SLLRSAVSVT CNHIFCNHCL TESMKSSSTC PVCKVPFRRR EIRPAPHMDN LVGILKSMEA ASGSNVVSTQ VTPAAQVADG
101: SKHANSEKKS KRSQKSTVQK KKISSEKKAN KTKSAVASAS GPTKKPSFST NKRIHVTPFP ESETPMRPQK IMKSQGTTDK LNGDAQEGKD KASASDKLEG
201: FSLSPFFWLR EREDAEGGTL ETLSEPPSLA TPLRHNAPCF SDIKDSDAGT PPNTTPNSKA VVPDAFDSEI FEWSQRPCSP ELRSTPRKKQ GKFEDILDHI
301: AEKDDEEDIQ LGGSFDESGH THNAAQPVKR KKGKKARGGN SRKTKLLEVI TKEADANQQD SNITKSLAAK SCEENSSAIE KNTSSRRNKA GNNINLFPCS
401: DDNSMGTFHP RENSLEIEVH DGHLSERSQK KEKSGQQKKC ARKLGTTGKS TVETTESNSE PRSKRVRKMP DSVNAEKIGV TDVSRNETEM PLLHSFMKSC
501: TQHKLLDGRS KRSSKKSKFS EGTNSQIGLD SMKSNITANT SSILLGRCQS SEAIRAAPSP MDASVKNKCA KSIKQTDCSE MKNFGKLQAC TGNTFLKKCD
601: DTVSKVFCAF CQSADITEES GEMVHYHNGK QVPVEFGGGA NVIHSHKNCM EWAPDVYFED DSVFNLTPEL TRSKRIKCAC CGVKGAALGC FDKSCRKSFH
701: FTCAKLIPEC RWDNENFVML CPLHQSSKLP KEVSEPQKQS KRITAPKCPS QVRSSQACSN NWKWPSGSPQ KWVLCCSALS AAEKGVVTEF AKLAGVPISK
801: SWSPSVTHVI ASTDPSGACK RTLKFLMAIL NGKWIVSIDW VKACMESMEP ADEQKFEVTT DVHGVSEGPK LGRQRAINKQ PKLFNGMQFY LHGDYTVTYR
901: GFLQDLVVAA GGTVLHRKPV SRDQQKLLDD RSSVFVVYSV ENQGKAKLGD NDNDRRRQAD EAQALAFASG GEAVSSAWII DSVAACKLQP L

Best Arabidopsis Sequence Match ( AT1G04020.2 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKG KRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.