Factsheet for TraesCS1D01G331700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G164600.1
TraesCS5B01G162100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21070.1	TraesCS5A01G164600.1	AT4G04020.1	16957774
AT4G21070.1	TraesCS5B01G162100.1	AT4G04020.1	16957774

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G010810.1	Barley	cytosol	4.47	91.49
TraesCS1B01G343100.2	Wheat	nucleus	92.93	89.31
TraesCS1A01G329600.1	Wheat	nucleus	90.23	87.59
HORVU1Hr1G077590.4	Barley	plastid	80.25	76.36
Os05t0512000-01	Rice	extracellular	61.85	60.28
Bra037622.1-P	Field mustard	nucleus	3.33	58.18
EES18483	Sorghum	nucleus	59.36	57.33
Zm00001d038667_P001	Maize	nucleus	51.98	54.41
GSMUA_Achr6P29980_001	Banana	nucleus	40.33	39.59
CDX76414	Canola	nucleus	32.43	34.82
Bra020883.1-P	Field mustard	nucleus	32.43	34.74
CDX82797	Canola	nucleus	32.33	34.52
AT4G21070.1	Thale cress	nucleus	33.26	34.01
CDY57063	Canola	nucleus	32.02	33.44
CDX79031	Canola	nucleus	32.22	33.41
Solyc08g023280.2.1	Tomato	nucleus	32.22	31.06
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	19.33	29.52
PGSC0003DMT400013749	Potato	nucleus	32.02	29.14
TraesCS1D01G304000.1	Wheat	nucleus	12.37	22.75
KRH11144	Soybean	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	33.06	22.27
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	12.58	18.45
TraesCS1D01G304600.1	Wheat	nucleus, plastid	14.24	17.84

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0000724	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006310	GO:GO:0006464	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009987	GO:GO:0010332	GO:GO:0016740	GO:GO:0019538	GO:GO:0071480
InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420	PFAM:PF00533
PFAM:PF13639	PFAM:PF13771	ScanProsite:PS00518	PFscan:PS50089	PFscan:PS50172	PFscan:PS51805
PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184	SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS1D01G331700	EnsemblPlants:TraesCS1D01G331700.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	TIGR:cd00027
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:422679247..422684168

Molecular Weight (calculated)

105005.0 Da

IEP (calculated)

9.139

GRAVY (calculated)

-0.632

Length

962 amino acids

Sequence
(BLAST)

001: MADMGSLERM GRELKCPICL SLLRSAVSVT CNHIFCNHCL TESMKSSSTC PVCKVPFRRR EIRPAPHMDN LVGILKSMEA ASGSNVVSTQ VTPAAQVADG
101: SKHANSGKKS KPLPKSTVQK KKISSERKAK KTKPTLSSAS GPTKKPSFSA NKRIHVTPFP ESETPMRPQK IMKSEETKDK LNGDVQEGKD KASASDKPGG
201: FSLSPFFWLR EGDDAEGGTL ETLSEPPSLA TPLRHNAPCF SDIKDSDAGT PPNTTPNGKF EDILDHIAEK DDEEDIQLGG SFDESGHTNN AAQHVNANKE
301: MKQKGKKAIG GNSRKIKLLE VITKEADANQ QDSNISKSLA AKSCEKNSST IEKNTSSRRN KAGKNINLFP CSDDNSMGTF HLRENSLEIE VHDGHLSERS
401: QKKEKSGQQK KCARKLGTKG KSTVETTESN SEPRSKRVRK MPDGVNAEKI GVTDVSRNET EMPLRSFMKS CTQHKLLDGR SKKSSKKGKF SEGTNSQIGL
501: DSMKSNINAN TSSILLGRCQ SSEAIRAAPS PMDASVKNKC AKGIKQTDCS GMKNFGKLQA CTGNTFLKKC DDTVSKVFCA FCHSADITEE SGEMVHYHNG
601: KQVPAESGGG ANVVHSHKNC MEWAPDVYFE DDSVFNLTPE LTRSKRIKCA CCGVKGAALG CFDKGCRKSF HFTCAKLIPE CRWDNENFVM LCPLHQSSKL
701: PNEVSQPQKQ PKRITAPKCP SQVRSSQACS NNWKWPSGSP QKWVLCCSAL SAAEKGVVTE FAKLAGVPIS KSWSPSVTHV IASTDPSGAC KRTLKFLMAI
801: LNGKWIVSID WVKACMDGME PVDEQKFEVT TDVHGVREGP KLGRQRVINK QPRLFDGMQF YLHGDYTVAY RGFLQDLVVA AGGTVLHRKP VSRDHQKLLD
901: DSSPLIVVYS LENQGKANLD GNDDYRRRQA DDAQALAFAS GGEAASSAWI IDSVAACKLQ PL

Best Arabidopsis Sequence Match ( AT4G21070.1 )
(BLAST)

001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I

Arabidopsis Description

BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.