Factsheet for HORVU1Hr1G077590.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G012460.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21070.1	HORVU0Hr1G012460.1	AT4G04020.1	16957774

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G010810.1	Barley	cytosol	4.25	91.49
TraesCS1A01G329600.1	Wheat	nucleus	81.11	82.74
TraesCS1B01G343100.2	Wheat	nucleus	81.31	82.12
TraesCS1D01G331700.1	Wheat	nucleus	76.36	80.25
Os05t0512000-01	Rice	extracellular	57.47	58.87
Bra037622.1-P	Field mustard	nucleus	3.17	58.18
EES18483	Sorghum	nucleus	56.38	57.23
Zm00001d038667_P001	Maize	nucleus	49.85	54.84
GSMUA_Achr6P29980_001	Banana	nucleus	39.86	41.12
Bra020883.1-P	Field mustard	nucleus	32.44	36.53
CDX76414	Canola	nucleus	32.15	36.27
CDY57063	Canola	nucleus	32.05	35.18
AT4G21070.1	Thale cress	nucleus	32.54	34.96
CDX82797	Canola	nucleus	30.86	34.63
Solyc08g023280.2.1	Tomato	nucleus	33.14	33.57
CDX79031	Canola	nucleus	30.76	33.51
PGSC0003DMT400013749	Potato	nucleus	32.74	31.32
HORVU2Hr1G088840.1	Barley	nucleus	18.1	29.42
HORVU2Hr1G088910.1	Barley	plastid	9.5	25.07
KRH11144	Soybean	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	33.93	24.02
HORVU1Hr1G069020.11	Barley	plastid	13.35	19.31
HORVU0Hr1G002630.3	Barley	mitochondrion	12.66	19.1

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	UniProt:A0A287GC70	InterPro:BRCA1-associated	InterPro:BRCT_dom
InterPro:BRCT_dom_sf	ncoils:Coil	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046872	EnsemblPlantsGene:HORVU1Hr1G077590	EnsemblPlants:HORVU1Hr1G077590.4	InterPro:IPR001357	InterPro:IPR001841
InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420	PFAM:PF00533	PFAM:PF13771	PFAM:PF13923
PFscan:PS50089	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184
SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850	UniParc:UPI000B474C38	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:517838766..517843977

Molecular Weight (calculated)

110420.0 Da

IEP (calculated)

8.811

GRAVY (calculated)

-0.652

Length

1011 amino acids

Sequence
(BLAST)

0001: SPPPPHTPHK SGNPHTRRSS GDPATGMADT ASLERMGREL KCPICLSLLR SAVSVTCNHI FCSSDCLMES MKSSSSCPVC KVPFRRREIR PAPHMDNLVG
0101: ILKSMEAASG CNVVSTQVTC PAEVADGSKH ANSGKKSTGS KKSAVQKKVS SEKKAKKTKP TVASTSGPTK KPSFSTNKRI HVTPFPESET PMRPRKIMKS
0201: VETKDKLNGD AHEGKDKALA SNTVGDLSLS PFFWLREGAD EEGGTVETLS EPPSLATPLR HNAPCFSDIK SSDDGTPPNA TPNSKAAVPD VFDSEIFEWS
0301: QKPCSPELRS TPRKKQGKFE DMLDHITETN DEEDIQLGGS FDESGHANDA AQPVNAKEMN QNGKKARDGN SRKTKLLKVI TKETEANQQD SNITKSLAAK
0401: SCEKNSSTID MNTSSRRNKA GNNINLLPCS NNNSMGTFHP QENTLEIEVH DGHLLKRSQE KENSGQQRKC AKKLGTTGKS AVETTKGNSE PRSKRVRKMP
0501: DGDNAEKIKV IDGSRDETEM PLLHSFMKSC TQHKLFDGRS KKSSKKSKLS EEMNGQIGLD SMKSNISANT SSILLGRCQS SEASFKNKCA KGIKQADSLG
0601: MKNFGKLQAC TGNTFLKKCD ATVSKVFCAF CQSADITEES GEMVHYHKGK QVPAEFSGGA NVIHSHKNCM EWAPDVYFED DSVFNLTPEL TRSKRIKCAC
0701: CGVKGAALGC FDKSCRKSFH FTCAKLVPEC RWDNENFVML CPLHQSSKLP NEVSEPQKQS KRITAPKCPS QVRASQACSN NWTWPSGSPQ KWVLCCSALS
0801: ASEREVVSEF AKLAGVPISK SWSPSVTHVV ASTDPSGACK RTLKFLMAIL NGKWIVSIDW VKACMDRMEP ADEQKFEVTT DVHGVREGPK LGRQRAINKQ
0901: PKLFNGMQFY LHGDYTLSYR GFLQDLVVAA GGTVLHRRPL SRDQQKLLDD SSPVVVVYSV ENQGKAMLDD NDDDRCRQAD EAQALACASG GKAASSAWII
1001: DSIAACKLQP L

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.