Factsheet for Bra037622.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
golgi 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000785.1-P
Bra029481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21070.1	Bra000785.1-P	AT4G04020.1	16957774
AT4G21070.1	Bra029481.1-P	AT4G04020.1	16957774

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G010810.1	Barley	cytosol	45.45	53.19
Bra020883.1-P	Field mustard	nucleus	87.27	5.35
CDX79031	Canola	nucleus	85.45	5.06
CDX82797	Canola	nucleus	81.82	4.99
AT4G21070.1	Thale cress	nucleus	74.55	4.36
TraesCS1D01G331700.1	Wheat	nucleus	58.18	3.33
HORVU1Hr1G077590.4	Barley	plastid	58.18	3.17
TraesCS1A01G329600.1	Wheat	nucleus	56.36	3.13
EES18483	Sorghum	nucleus	56.36	3.11
Solyc08g023280.2.1	Tomato	nucleus	56.36	3.11
TraesCS1B01G343100.2	Wheat	nucleus	54.55	3.0
GSMUA_Achr6P29980_001	Banana	nucleus	50.91	2.86
PGSC0003DMT400013749	Potato	nucleus	54.55	2.84
Os05t0512000-01	Rice	extracellular	45.45	2.53
KRH11144	Soybean	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	63.64	2.45
Bra032532.1-P	Field mustard	nucleus	49.09	2.39
Zm00001d038667_P001	Maize	nucleus	16.36	0.98

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf	EnsemblPlantsGene:Bra037622
EnsemblPlants:Bra037622.1	EnsemblPlants:Bra037622.1-P	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001357	InterPro:IPR036420
UniProt:M4F959	PFscan:PS50172	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SUPFAM:SSF52113	UniParc:UPI000254399A

Description

AT4G21070 (E=6e-020) ATBRCA1, BRCA1 | ATBRCA1; ubiquitin-protein ligase

Coordinates

chrA01:+:13388495..13388749

Molecular Weight (calculated)

6413.8 Da

IEP (calculated)

7.357

GRAVY (calculated)

-0.322

Length

55 amino acids

Sequence
(BLAST)

1: MMGILEGKWI LSIDWIKACM KDREYVSEEL YEISIDVHGT RQGPFTGRQR ALNKV

Best Arabidopsis Sequence Match ( AT4G21070.1 )
(BLAST)

001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I

Arabidopsis Description

BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.