Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES12270 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G21070.1 | EES12270 | AT4G04020.1 | 16957774 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038667_P001 | Maize | nucleus | 70.28 | 76.17 |
| HORVU4Hr1G010810.1 | Barley | cytosol | 3.41 | 72.34 |
| TraesCS1A01G329600.1 | Wheat | nucleus | 60.14 | 60.44 |
| Os05t0512000-01 | Rice | extracellular | 59.74 | 60.28 |
| TraesCS1D01G331700.1 | Wheat | nucleus | 57.33 | 59.36 |
| TraesCS1B01G343100.2 | Wheat | nucleus | 59.64 | 59.34 |
| HORVU1Hr1G077590.4 | Barley | plastid | 57.23 | 56.38 |
| Bra037622.1-P | Field mustard | nucleus | 3.11 | 56.36 |
| GSMUA_Achr6P29980_001 | Banana | nucleus | 40.16 | 40.82 |
| CDX82797 | Canola | nucleus | 32.43 | 35.85 |
| Bra020883.1-P | Field mustard | nucleus | 32.23 | 35.75 |
| CDX76414 | Canola | nucleus | 32.13 | 35.71 |
| CDX79031 | Canola | nucleus | 32.33 | 34.7 |
| CDY57063 | Canola | nucleus | 31.83 | 34.42 |
| AT4G21070.1 | Thale cress | nucleus | 31.73 | 33.58 |
| Solyc08g023280.2.1 | Tomato | nucleus | 33.53 | 33.47 |
| EES12490 | Sorghum | cytosol, nucleus, plasma membrane | 20.08 | 32.1 |
| PGSC0003DMT400013749 | Potato | nucleus | 33.13 | 31.22 |
| OQU85242 | Sorghum | nucleus | 10.24 | 24.34 |
| KRH11144 | Soybean | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 34.04 | 23.74 |
| KXG22233 | Sorghum | nucleus | 12.85 | 18.6 |
Protein Annotations
Description
hypothetical protein
Coordinates
chr9:+:54447637..54452600
Molecular Weight (calculated)
109127.0 Da
IEP (calculated)
8.915
GRAVY (calculated)
-0.575
Length
996 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVGSLERM GRELKCPICL SLFTSAVSIT CNHIFCNACL TESMKSASCC PVCKVPFHRR EIRPAPHMDN LVSVFKSMEA AAGTSIVSTQ LTPAPKVAEC
101: GGNSAGKPKR SNKKKPASRN KKNTPKATKT SASCSTAKPS ISKNKRIHVT PFPESETPIR PKKVMKSDEQ KSKQNGDVNE EDKDKTLNSD IPESPSLSPF
201: FWLREEEENE GGTAETLSEP PSLDTPLRHN APTFSDIKDS DDERSNDMTP NSKAEVSEIF DSEIFEWSQR PCSPELRSTP LKSQGKLKNI LDQITEVDDD
301: EDMNLGGSFD KLDLESNVAQ PLNAEEVKKK KLARPRKRKN SKLPSCGKLC TRGSDAEHQV ANIPESIVAK PWQKDNSKKE RNTSNGGNMV SGSNTRAVFS
401: SDKSMNTFSP QAGGLGNEVP ENQLSERIPK KGTNSRRKLE IAGDSAVKTA ENKSEQRGKR IRRISDGAVA EKIRILSEAE NEIELFQLHS LTKGCTQHKP
501: LDGRSKKNIV SNISPNTPSI LPGRDQFNIG PNTPSILPGR CPLNEAIRTV PSVRNVSVKN GSAKSIEQQD YSGTIRSCTA RNAVLKKCEG KASKLSCAFC
601: QSDEITEGSG EMVHYHNGKQ VPAAFDGGAS VVHCHKNCLE WAPDVYFEDD SVFNLTNELA RSKRIKCACC GIKGAALGCF ETSCRKSFHF TCAKLIPECR
701: WDNENFVMLC PLHQSSKLPR ETSGLKKKSH RKLAPKGPSQ VNTSQCHGNK WTWPSGSPEK WVLCCSALSA AEKGIVSEFG KLAGVPISTS WSPNVTHVIA
801: STDMSGACKR TLKFLMAILN GKWVISIDWV KTCMELMEPV DELKFEVSTD VHGTAEGPRL GRQRVINKQP KLFDGFQFYL HGDYSKSYRG YLQDLVVAAG
901: GTVLQRKPVS RNQQKLLDDS SFILIVYSIE NQDKAKPGSR AGINTNHSQV DAQALACASG GKVVSSAWII DSIAACKVQP FKGAFHAALH VCLHAR
101: GGNSAGKPKR SNKKKPASRN KKNTPKATKT SASCSTAKPS ISKNKRIHVT PFPESETPIR PKKVMKSDEQ KSKQNGDVNE EDKDKTLNSD IPESPSLSPF
201: FWLREEEENE GGTAETLSEP PSLDTPLRHN APTFSDIKDS DDERSNDMTP NSKAEVSEIF DSEIFEWSQR PCSPELRSTP LKSQGKLKNI LDQITEVDDD
301: EDMNLGGSFD KLDLESNVAQ PLNAEEVKKK KLARPRKRKN SKLPSCGKLC TRGSDAEHQV ANIPESIVAK PWQKDNSKKE RNTSNGGNMV SGSNTRAVFS
401: SDKSMNTFSP QAGGLGNEVP ENQLSERIPK KGTNSRRKLE IAGDSAVKTA ENKSEQRGKR IRRISDGAVA EKIRILSEAE NEIELFQLHS LTKGCTQHKP
501: LDGRSKKNIV SNISPNTPSI LPGRDQFNIG PNTPSILPGR CPLNEAIRTV PSVRNVSVKN GSAKSIEQQD YSGTIRSCTA RNAVLKKCEG KASKLSCAFC
601: QSDEITEGSG EMVHYHNGKQ VPAAFDGGAS VVHCHKNCLE WAPDVYFEDD SVFNLTNELA RSKRIKCACC GIKGAALGCF ETSCRKSFHF TCAKLIPECR
701: WDNENFVMLC PLHQSSKLPR ETSGLKKKSH RKLAPKGPSQ VNTSQCHGNK WTWPSGSPEK WVLCCSALSA AEKGIVSEFG KLAGVPISTS WSPNVTHVIA
801: STDMSGACKR TLKFLMAILN GKWVISIDWV KTCMELMEPV DELKFEVSTD VHGTAEGPRL GRQRVINKQP KLFDGFQFYL HGDYSKSYRG YLQDLVVAAG
901: GTVLQRKPVS RNQQKLLDDS SFILIVYSIE NQDKAKPGSR AGINTNHSQV DAQALACASG GKVVSSAWII DSIAACKVQP FKGAFHAALH VCLHAR
001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
Arabidopsis Description
BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.