Factsheet for GSMUA_Achr6P29980_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P12980_001
GSMUA_Achr4P20110_001
GSMUA_Achr7P05510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21070.1	GSMUA_Achr3P12980_001	AT4G04020.1	16957774
AT4G21070.1	GSMUA_Achr4P20110_001	AT4G04020.1	16957774
AT4G21070.1	GSMUA_Achr7P05510_001	AT4G04020.1	16957774

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G010810.1	Barley	cytosol	2.76	57.45
Bra037622.1-P	Field mustard	nucleus	2.86	50.91
TraesCS1A01G329600.1	Wheat	nucleus	42.04	41.57
Os05t0512000-01	Rice	extracellular	41.53	41.24
TraesCS1B01G343100.2	Wheat	nucleus	41.33	40.46
TraesCS1D01G331700.1	Wheat	nucleus	39.59	40.33
EES18483	Sorghum	nucleus	40.82	40.16
HORVU1Hr1G077590.4	Barley	plastid	41.12	39.86
Zm00001d038667_P001	Maize	nucleus	36.63	39.06
CDX82797	Canola	nucleus	32.24	35.07
Bra020883.1-P	Field mustard	nucleus	31.12	33.96
CDX76414	Canola	nucleus	31.02	33.93
CDX79031	Canola	nucleus	31.73	33.51
GSMUA_Achr8P12560_001	Banana	nucleus	21.73	33.44
Solyc08g023280.2.1	Tomato	nucleus	33.88	33.27
CDY57063	Canola	nucleus	31.22	33.22
AT4G21070.1	Thale cress	nucleus	31.63	32.94
PGSC0003DMT400013749	Potato	nucleus	34.08	31.6
GSMUA_Achr8P13610_001	Banana	cytosol	15.82	28.34
KRH11144	Soybean	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	35.82	24.58

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0000724	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006310	GO:GO:0006464	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010332	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0046872	GO:GO:0071480	EnsemblPlantsGene:GSMUA_Achr6G29980_001	EnsemblPlants:GSMUA_Achr6P29980_001	EnsemblPlants:GSMUA_Achr6T29980_001
InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420	UniProt:M0TBE3
PFAM:PF13771	PFAM:PF13923	ScanProsite:PS00518	PFscan:PS50089	PFscan:PS50172	PFscan:PS51805
PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184	SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850
UniParc:UPI000295043A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	:	:

Description

ATBARD1/BARD1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G29980_001]

Coordinates

chr6:+:30109305..30114262

Molecular Weight (calculated)

109532.0 Da

IEP (calculated)

8.611

GRAVY (calculated)

-0.635

Length

980 amino acids

Sequence
(BLAST)

001: MADLANLEKM GTELKCPICW SLLNSAVSLS CNHVFCNSCI AESMKKSASD CPVCKVPFRR REVRAAPHMD NLVSIFKSME DMAGTNIFST QIGPQNLGEF
101: FLHIFASNMI LDKSKRKECS QIENAKEKTK AGRSPHYKPK TPSFPAKKRI HVTPYSASET PLRPEKIHKL EDARIELTGD TELNDNKKLF ADDTEDPSLS
201: PFFWLRGNDD IDESPQKPSD QQIMETPSPQ SAPCFSDMKD SDDEKPTLPT PTNKLNVAAD FDSEMFEWSQ RAYSPELFST PQRTQTVERH RLLKIPEKEC
301: QGNIDAVVHY EDANVGTASI GKKILHKRRR NSNTLLKSRK SLIKEDQDFR SHDVNGEVPC NSEDVVDRSY PKPKRTSVKG CQKSATSYQT NCSMSLRSLK
401: KQFNNAAIEA SEQSPDISVK AKYSSVIKGS GGTAKRSDRK IKGTDSELQR KHLKRSNIDV QAEVPEAIVS LTNDAEIQDE SNIKFPELPA STLQQRKTEK
501: LSSEILDKSG KHIHQKKRIA KNQASELKVT SAVKVPATPM GTAACESNKT SSNALKEYKL SLAVKNTSKN RIQSTENIIM RKCQESHSPI RCAFCHSSTD
601: TEDSGEMMHY FNGKPVAADF NGGRNVIHSH KHCTEWAPDV YFEDDMAINL TAEVSRSRRI KCSCCGANGA ALGCYERSCR KSFHFTCAKL MQECKWDTQN
701: FVMLCPLHSS MELPNEVSEP QRQSRKKSTT KGSSQASSIN TCDHPSQKWK WPSGSPCKWM ICCSALSAAE KEAVSKFAKV TGVPISNTWN PEITHIIAST
801: DHNGAYRRTL KILKGIIDGK WILKVDWINA CMDAMEPIDE EKFEVTVDIH GISDGPRLGR LRAINKQPKF FNGFKFYFSG DYTPSYKGYL QDLVIAAGGS
901: VLQRKPISRD NKRLLGDAST WRTLIVFSIE HPEKHNCNSD TVIYHRRSEA QALADASGGT LAGSTWIIDS IAACKLQPLT

Best Arabidopsis Sequence Match ( AT4G21070.1 )
(BLAST)

001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I

Arabidopsis Description

BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.