Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G012460.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G21070.1 | HORVU0Hr1G012460.1 | AT4G04020.1 | 16957774 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037622.1-P | Field mustard | nucleus | 53.19 | 45.45 |
| TraesCS1D01G331700.1 | Wheat | nucleus | 91.49 | 4.47 |
| HORVU1Hr1G077590.4 | Barley | plastid | 91.49 | 4.25 |
| TraesCS1B01G343100.2 | Wheat | nucleus | 89.36 | 4.2 |
| TraesCS1A01G329600.1 | Wheat | nucleus | 85.11 | 4.04 |
| EES18483 | Sorghum | nucleus | 72.34 | 3.41 |
| HORVU2Hr1G088840.1 | Barley | nucleus | 44.68 | 3.38 |
| Os05t0512000-01 | Rice | extracellular | 70.21 | 3.34 |
| AT4G21070.1 | Thale cress | nucleus | 57.45 | 2.87 |
| CDX76414 | Canola | nucleus | 53.19 | 2.79 |
| Bra020883.1-P | Field mustard | nucleus | 53.19 | 2.78 |
| CDX82797 | Canola | nucleus | 53.19 | 2.77 |
| GSMUA_Achr6P29980_001 | Banana | nucleus | 57.45 | 2.76 |
| CDY57063 | Canola | nucleus | 53.19 | 2.71 |
| CDX79031 | Canola | nucleus | 51.06 | 2.59 |
| Solyc08g023280.2.1 | Tomato | nucleus | 48.94 | 2.3 |
| HORVU0Hr1G002630.3 | Barley | mitochondrion | 31.91 | 2.24 |
| HORVU1Hr1G069020.11 | Barley | plastid | 31.91 | 2.15 |
| PGSC0003DMT400013749 | Potato | nucleus | 46.81 | 2.08 |
| KRH11144 | Soybean | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 55.32 | 1.82 |
| Zm00001d038667_P001 | Maize | nucleus | 17.02 | 0.87 |
| HORVU2Hr1G088910.1 | Barley | plastid | 6.38 | 0.78 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G010810.1 | EnsemblPlantsGene:HORVU4Hr1G010810 | Gene3D:3.40.50.10190 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
| GO:GO:0006950 | GO:GO:0006974 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:BRCA1-associated |
| InterPro:BRCT_dom_sf | InterPro:IPR036420 | PANTHER:PTHR13763 | PANTHER:PTHR13763:SF1 | SUPFAM:SSF52113 | UniParc:UPI000B477B6D |
| UniProt:A0A287N742 | MapMan:14.3.1.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:32485610..32487101
Molecular Weight (calculated)
5327.6 Da
IEP (calculated)
9.460
GRAVY (calculated)
-0.266
Length
47 amino acids
Sequence
(BLAST)
(BLAST)
1: MAILNGKWIV SIGWVKACMD RMEPVDKQKF EVTTDVHGVR EGPKLGR
001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
Arabidopsis Description
BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.