Factsheet for AT4G21070.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037622.1-P	Field mustard	nucleus	4.36	74.55
CDX82797	Canola	nucleus	62.49	65.26
CDX79031	Canola	nucleus	63.23	64.12
Bra020883.1-P	Field mustard	nucleus	60.79	63.7
CDX76414	Canola	nucleus	59.51	62.5
CDY57063	Canola	nucleus	61.11	62.43
HORVU4Hr1G010810.1	Barley	cytosol	2.87	57.45
Solyc08g023280.2.1	Tomato	nucleus	37.41	35.27
TraesCS1A01G329600.1	Wheat	nucleus	35.71	33.91
Os05t0512000-01	Rice	extracellular	35.28	33.64
PGSC0003DMT400013749	Potato	nucleus	37.73	33.59
TraesCS1D01G331700.1	Wheat	nucleus	34.01	33.26
TraesCS1B01G343100.2	Wheat	nucleus	35.18	33.07
HORVU1Hr1G077590.4	Barley	plastid	34.96	32.54
EES18483	Sorghum	nucleus	33.58	31.73
GSMUA_Achr6P29980_001	Banana	nucleus	32.94	31.63
Zm00001d038667_P001	Maize	nucleus	30.71	31.45
AT1G04020.1	Thale cress	nucleus	22.85	30.15
KRH11144	Soybean	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	38.36	25.28

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	EntrezGene:827854	ProteinID:AEE84396.1	EMBL:AF515728
ArrayExpress:AT4G21070	EnsemblPlantsGene:AT4G21070	RefSeq:AT4G21070	TAIR:AT4G21070	RefSeq:AT4G21070-TAIR-G	EnsemblPlants:AT4G21070.1
TAIR:AT4G21070.1	Symbol:ATBRCA1	EMBL:AY081328	Unigene:At.32665	InterPro:BRCA1-associated	InterPro:BRCT_dom
InterPro:BRCT_dom_sf	EMBL:BT010547	ProteinID:CAB45902.1	ProteinID:CAB79107.1	ncoils:Coil	InterPro:EPHD
GO:GO:0000724	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005886	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006310	GO:GO:0006464	GO:GO:0006629	GO:GO:0006950
GO:GO:0006974	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009628	GO:GO:0009987	GO:GO:0010332	GO:GO:0016020	GO:GO:0016043	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031436	GO:GO:0035066	GO:GO:0035067	GO:GO:0042127
GO:GO:0045717	GO:GO:0045944	GO:GO:0046872	GO:GO:0070531	GO:GO:0071158	GO:GO:0071480
InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420	RefSeq:NP_193839.4
PFAM:PF00533	PFAM:PF13771	PFAM:PF13923	PFAM:PF16589	PIRSF:PIRSF001734	PO:PO:0000003
PO:PO:0000037	PO:PO:0000084	PO:PO:0000293	PO:PO:0001078	PO:PO:0001081	PO:PO:0004507
PO:PO:0007611	PO:PO:0007616	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009046
PO:PO:0009052	PO:PO:0025022	ScanProsite:PS00518	PFscan:PS50089	PFscan:PS50172	PFscan:PS51805
PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	UniProt:Q8RXD4	SMART:SM00184	SMART:SM00292	SUPFAM:SSF52113
SUPFAM:SSF57850	UniParc:UPI00000038BB	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]

Coordinates

chr4:+:11247991..11252757

Molecular Weight (calculated)

103927.0 Da

IEP (calculated)

9.412

GRAVY (calculated)

-0.684

Length

941 amino acids

Sequence
(BLAST)

001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.