Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G21070.1 | CDX90850 | AT4G04020.1 | 16957774 |
| AT4G21070.1 | CDX94540 | AT4G04020.1 | 16957774 |
| AT4G21070.1 | CDY16684 | AT4G04020.1 | 16957774 |
| AT4G21070.1 | CDY21291 | AT4G04020.1 | 16957774 |
| AT4G21070.1 | CDY71809 | AT4G04020.1 | 16957774 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037622.1-P | Field mustard | nucleus | 5.06 | 85.45 |
| CDX82797 | Canola | nucleus | 82.11 | 84.57 |
| CDY57063 | Canola | nucleus | 66.38 | 66.88 |
| CDX76414 | Canola | nucleus | 63.69 | 65.96 |
| AT4G21070.1 | Thale cress | nucleus | 64.12 | 63.23 |
| HORVU4Hr1G010810.1 | Barley | cytosol | 2.59 | 51.06 |
| Solyc08g023280.2.1 | Tomato | nucleus | 37.18 | 34.57 |
| Os05t0512000-01 | Rice | extracellular | 35.13 | 33.03 |
| TraesCS1A01G329600.1 | Wheat | nucleus | 34.81 | 32.59 |
| PGSC0003DMT400013749 | Potato | nucleus | 36.85 | 32.36 |
| EES18483 | Sorghum | nucleus | 34.7 | 32.33 |
| TraesCS1D01G331700.1 | Wheat | nucleus | 33.41 | 32.22 |
| GSMUA_Achr6P29980_001 | Banana | nucleus | 33.51 | 31.73 |
| TraesCS1B01G343100.2 | Wheat | nucleus | 34.16 | 31.67 |
| CDY10084 | Canola | vacuole | 23.38 | 31.13 |
| HORVU1Hr1G077590.4 | Barley | plastid | 33.51 | 30.76 |
| Zm00001d038667_P001 | Maize | nucleus | 30.17 | 30.47 |
| CDY68257 | Canola | mitochondrion, plastid | 6.25 | 24.89 |
| KRH11144 | Soybean | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 37.39 | 24.3 |
| CDY32524 | Canola | cytosol | 21.88 | 18.56 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:14.3.1.1 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10190 |
| GO:A0A078CPC7 | InterPro:BRCA1-associated | InterPro:BRCT_dom | InterPro:BRCT_dom_sf | EnsemblPlants:CDX79031 | ProteinID:CDX79031 |
| ProteinID:CDX79031.1 | InterPro:EPHD | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 |
| GO:GO:0006974 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00131562001 | InterPro:IPR001357 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR034732 | InterPro:IPR036420 | PFAM:PF00533 | PFAM:PF13771 |
| PFAM:PF13923 | PFAM:PF16589 | PIRSF:PIRSF001734 | ScanProsite:PS00518 | PFscan:PS50089 | PFscan:PS50172 |
| PFscan:PS51805 | PANTHER:PTHR13763 | PANTHER:PTHR13763:SF1 | SMART:SM00184 | SMART:SM00292 | SUPFAM:SSF52113 |
| SUPFAM:SSF57850 | UniParc:UPI0004EEDD66 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg |
Description
BnaA01g10980D
Coordinates
chrLK031816:+:1430362..1434643
Molecular Weight (calculated)
102189.0 Da
IEP (calculated)
8.909
GRAVY (calculated)
-0.666
Length
928 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEASHLEKM GRELKCPICL SLFDSAASLS CNHVFCNKCI VKSMKVDATC PVCKIPFHRR EIRGAPHMDS LVSIYKNMED ASGVHMFVSQ NIPSPSEKEN
101: HVGDASIETK NGKRHQGASK GRVSKKRGCK KAKERDLDAP GPIVMKPSSQ TKKRVQLLQN QSTTESLTKS TESFESAEKL KDYTEETVIR LNEHTSLNKV
201: ENMAPFFWLR DEDDEESLSQ PAESDPFLDV TPVDVPSFSD LKDSDHDSPS KAIEQERPNP GEMFDSEMFE WTQRPSSPEI LPSPVKAKAL RKDETQMNLP
301: KGASSNKKRK AGTARKTVAK RLVGVSKEDY TEPSAGATIS EKQESGGNSG TSTRKDENVK AKRATRNKGQ ISLVEEAGVN THVEAEVKQG TKRKRSSVKV
401: SPNPPVAGSN ELSLGTEDVG KGYQELTHGS AGTQPEKQSP SEKYSLRKRI KSSAPSLPKC SPVITKKKTS EKRSKLGSSS IPSRVTQIIR DELNQLGDRQ
501: DSSNKKKPSV DEGTHTMQVS EKSSTMNKPS LGDNALLRRC DGPLTSKFTC AFCQSSEDTE ASGEMAHYHR GEPVSADFSG GSKVIHAHKN CAEWAPNVYF
601: NNLTAVNLDA ELTRSRRITC SSCGLKGAAL GCYNASCKSS FHVTCAKQIP ECRWDNKNFV MLCPSDASSK LPCEETSPKG RKRKCSPPKG LQHSRPNQVS
701: VIPDISENQS KPFHGLSKKL VLCCSGLTDE EKSVISEFAE LSGVTILRKW EPRVTHIIAS INDNGACKRT LKFMMGVLEG KWILSIDWIK ACMNNREYVT
801: EEPYEISIDV HGTRQGPYIG RQRALNKEPK LFSGLKFYMM GDFEVAYKGY LQDMIVAAGG TILLRRPIAD DDSEASTIIV FSVEPSKKKT LTQRRSDAEA
901: LAKSSRARAA SSSWVLDSIA GCQILDLI
101: HVGDASIETK NGKRHQGASK GRVSKKRGCK KAKERDLDAP GPIVMKPSSQ TKKRVQLLQN QSTTESLTKS TESFESAEKL KDYTEETVIR LNEHTSLNKV
201: ENMAPFFWLR DEDDEESLSQ PAESDPFLDV TPVDVPSFSD LKDSDHDSPS KAIEQERPNP GEMFDSEMFE WTQRPSSPEI LPSPVKAKAL RKDETQMNLP
301: KGASSNKKRK AGTARKTVAK RLVGVSKEDY TEPSAGATIS EKQESGGNSG TSTRKDENVK AKRATRNKGQ ISLVEEAGVN THVEAEVKQG TKRKRSSVKV
401: SPNPPVAGSN ELSLGTEDVG KGYQELTHGS AGTQPEKQSP SEKYSLRKRI KSSAPSLPKC SPVITKKKTS EKRSKLGSSS IPSRVTQIIR DELNQLGDRQ
501: DSSNKKKPSV DEGTHTMQVS EKSSTMNKPS LGDNALLRRC DGPLTSKFTC AFCQSSEDTE ASGEMAHYHR GEPVSADFSG GSKVIHAHKN CAEWAPNVYF
601: NNLTAVNLDA ELTRSRRITC SSCGLKGAAL GCYNASCKSS FHVTCAKQIP ECRWDNKNFV MLCPSDASSK LPCEETSPKG RKRKCSPPKG LQHSRPNQVS
701: VIPDISENQS KPFHGLSKKL VLCCSGLTDE EKSVISEFAE LSGVTILRKW EPRVTHIIAS INDNGACKRT LKFMMGVLEG KWILSIDWIK ACMNNREYVT
801: EEPYEISIDV HGTRQGPYIG RQRALNKEPK LFSGLKFYMM GDFEVAYKGY LQDMIVAAGG TILLRRPIAD DDSEASTIIV FSVEPSKKKT LTQRRSDAEA
901: LAKSSRARAA SSSWVLDSIA GCQILDLI
001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
Arabidopsis Description
BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.