CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g066080.1.1	Tomato	cytosol	18.45	17.62
Solyc12g042000.1.1	Tomato	nucleus	15.02	16.91
Solyc12g041980.1.1	Tomato	mitochondrion	17.6	16.67
VIT_07s0005g03940.t01	Wine grape	plastid	29.18	16.23
Solyc05g016230.2.1	Tomato	nucleus	30.9	16.04
Solyc09g066090.2.1	Tomato	nucleus	13.3	14.22
AT1G04020.1	Thale cress	nucleus	41.63	13.6
CDY10084	Canola	vacuole	37.77	12.63
GSMUA_Achr8P13610_001	Banana	cytosol	27.04	11.52
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	25.75	10.51
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	31.33	10.4
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	30.9	10.21
GSMUA_Achr8P12560_001	Banana	nucleus	27.9	10.2
HORVU2Hr1G088910.1	Barley	plastid	16.74	10.18
TraesCS1B01G315000.1	Wheat	nucleus	21.89	10.18
Os04t0512400-01	Rice	cytosol	27.47	10.17
KRG95712	Soybean	nucleus	29.18	10.07
TraesCS1D01G304000.1	Wheat	nucleus	22.32	9.94
KRH67433	Soybean	nucleus	28.76	9.88
Os05t0486600-01	Rice	mitochondrion	23.61	9.86
EES12490	Sorghum	cytosol, nucleus, plasma membrane	26.18	9.79
TraesCS2A01G384900.1	Wheat	nucleus	25.75	9.72
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	25.75	9.52
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	26.61	9.52
HORVU2Hr1G088840.1	Barley	nucleus	25.32	9.49
Zm00001d017078_P002	Maize	cytosol	20.17	8.9
OQU85242	Sorghum	nucleus	15.45	8.59
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	24.03	8.51
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	23.61	8.38
CDY32524	Canola	cytosol	38.63	8.23
HORVU0Hr1G002630.3	Barley	mitochondrion	23.18	8.06
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	22.75	7.98
HORVU1Hr1G069020.11	Barley	plastid	22.75	7.58
TraesCS1D01G304600.1	Wheat	nucleus, plastid	24.46	7.42
KXG22233	Sorghum	nucleus	21.89	7.41
TraesCS1B01G315300.1	Wheat	plastid	23.61	7.15
TraesCS1A01G304700.1	Wheat	nucleus	23.61	6.77
CDX76414	Canola	nucleus	25.32	6.58
CDX82797	Canola	nucleus	24.46	6.33
CDX79031	Canola	nucleus	24.89	6.25
CDY57063	Canola	nucleus	24.46	6.19

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:14.3.1.1	Gene3D:3.40.50.10190	GO:A0A078JS87
UniProt:A0A078JS87	InterPro:BRCA1-associated	InterPro:BRCT_dom_sf	EnsemblPlants:CDY68257	ProteinID:CDY68257	ProteinID:CDY68257.1
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00072110001	InterPro:IPR036420	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1
UniParc:UPI0004EE0D6D	:	:	:	:	:

Description

BnaCnng58240DBnaCnng58240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JS87]

Coordinates

chrLK037061:+:328..3650

Molecular Weight (calculated)

25965.7 Da

IEP (calculated)

10.193

GRAVY (calculated)

-0.136

Length

233 amino acids

Sequence
(BLAST)

001: MALKTTVPAN ATAAQTRKKA PQVYSEADTL RNLKSRLAKG LIIKCTKCNL KGDAFVCYIK SCRWDYVCFT TFSSFASNYI IKNYLPQHCA SRAEPLPKLY
101: QSSSLLTTRQ PRNPILCGYI IPTLLKKNLS SHFIAFPQYW NPSVTHVLAS KDVKGACTRT VNVIMDILNG KGIIIAYFSK LLKAIDEEPF DIHVATQRSQ
201: NGPKTAKLKV ATNVQHDPAN FALPQQAEVV RLT

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.