Factsheet for Os04t0512400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12490	Sorghum	cytosol, nucleus, plasma membrane	73.29	74.0
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	72.34	69.89
TraesCS2A01G384900.1	Wheat	nucleus	64.71	65.96
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	59.62	65.67
HORVU2Hr1G088840.1	Barley	nucleus	64.07	64.79
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	63.43	63.33
HORVU2Hr1G088910.1	Barley	plastid	30.21	49.61
GSMUA_Achr8P12560_001	Banana	nucleus	48.49	47.88
VIT_07s0005g03940.t01	Wine grape	plastid	29.73	44.63
Solyc09g066080.1.1	Tomato	cytosol	17.17	44.26
Solyc12g041980.1.1	Tomato	mitochondrion	16.69	42.68
Solyc05g016230.2.1	Tomato	nucleus	30.21	42.32
Solyc09g066090.2.1	Tomato	nucleus	13.51	38.99
Solyc12g042000.1.1	Tomato	nucleus	11.92	36.23
KRG95712	Soybean	nucleus	38.16	35.56
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	39.43	35.33
KRH67433	Soybean	nucleus	38.0	35.25
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	39.27	35.04
AT1G04020.1	Thale cress	nucleus	36.09	31.84
CDY10084	Canola	vacuole	33.86	30.56
CDY68257	Canola	mitochondrion, plastid	10.17	27.47
Os05t0486600-01	Rice	mitochondrion	22.89	25.81
Os05t0512000-01	Rice	extracellular	32.91	20.97
Bra032532.1-P	Field mustard	nucleus	33.86	18.87
CDY32524	Canola	cytosol	30.84	17.73

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	EntrezGene:4336384	EMBL:AK103203	ProteinID:BAF15212.1
ProteinID:BAS90048.1	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf	ProteinID:CAE03392.2	ProteinID:EEE61329.1
InterPro:EPHD	GO:GO:0000724	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005886	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006629	GO:GO:0006950	GO:GO:0006974
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031436	GO:GO:0035066
GO:GO:0035067	GO:GO:0042127	GO:GO:0045717	GO:GO:0045944	GO:GO:0046872	GO:GO:0070531
GO:GO:0071158	InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420
EnsemblPlantsGene:Os04g0512400	EnsemblPlants:Os04t0512400-01	PFAM:PF00533	PFAM:PF13445	PFAM:PF13771	PFscan:PS50089
PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	UniProt:Q7XPZ2	SMART:SM00184
SMART:SM00249	SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850	UniParc:UPI000021C6F7	RefSeq:XP_015634058.1
InterPro:Znf-RING_LisH	InterPro:Znf_PHD	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

RING finger protein OsRFPHC-12, RING-HC protein 12Similar to Midline 1 protein (Tripartite motif protein 18). (Os04t0512400-01)

Coordinates

chr4:-:25611673..25615824

Molecular Weight (calculated)

68912.7 Da

IEP (calculated)

6.707

GRAVY (calculated)

-0.392

Length

629 amino acids

Sequence
(BLAST)

001: MESFRRFLNP LVLNLQKMEL ELTCPVCLKL LNAPTMLPCY HTSCSKCATT RTMDGYSCAI CKSAYRSQDL RPASHLEAIV NIHRSLSSTV SSMVTQQEAQ
101: ADIPVAKTSF QGTPESGNRN GAEKSDQVKS YTPVASKLAY NQSTGLAYGN VDGVKERNPA LETRGAADVT AMPTILVQKG PCRSQSSDGP RDLDCDSNDL
201: EGELITSRSS PQSVLKREPN TANDDNRELK RQKSTDQDDR QPAVAGAWKC EFCHSSKTTE STGPLSHYLH GEPLEDNQAW KPNVLHVHEK CIEWAPQAFF
301: TGDIANNLEP ELARASKIKC SVCGLKGAAL GCLVKSCRKS FHVPCAHGIS GCRWDDENFV MLCPSHSSKK LPCERSKSKN KKTSLQRSSS DTMLDDLNSP
401: STIHMDGLWT ASPFLTSEWV ICGSALSSQE KEILDQFEHQ TGITVTNGWR SNVTHVIANT DECGACARTL KVLMAILAGK WVLNINWLKA CMEAKEPVPE
501: EPYEISSDVH GSFDGPRMGR LRAMQNAPHL FAGLTFYFSG HFMPNYKVHL EDLITAAGGS ILDKADLSST SLIIYSMEPP QGSDPDTLNE VIRKRKAEAE
601: ELAATIGSRA VPHTCVLDSI ASCTVQLTM

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.