Factsheet for Solyc12g041980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g066080.1.1	Tomato	cytosol	83.74	84.43
Solyc05g016230.2.1	Tomato	nucleus	89.02	48.78
VIT_07s0005g03940.t01	Wine grape	plastid	47.97	28.16
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	63.82	22.36
KRG95712	Soybean	nucleus	51.63	18.81
KRH67433	Soybean	nucleus	51.22	18.58
CDY68257	Canola	mitochondrion, plastid	16.67	17.6
Os04t0512400-01	Rice	cytosol	42.68	16.69
HORVU2Hr1G088840.1	Barley	nucleus	39.84	15.76
TraesCS2A01G384900.1	Wheat	nucleus	39.43	15.72
GSMUA_Achr8P12560_001	Banana	nucleus	40.24	15.54
CDY10084	Canola	vacuole	43.9	15.49
AT1G04020.1	Thale cress	nucleus	44.72	15.43
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	39.43	15.4
EES12490	Sorghum	cytosol, nucleus, plasma membrane	38.21	15.09
GSMUA_Achr8P13610_001	Banana	cytosol	32.52	14.63
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	38.62	14.59
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	32.52	14.01
OQU85242	Sorghum	nucleus	22.76	13.37
Zm00001d017078_P002	Maize	cytosol	28.05	13.07
TraesCS1B01G315000.1	Wheat	nucleus	23.98	11.78
TraesCS1D01G304000.1	Wheat	nucleus	24.39	11.47
Os05t0486600-01	Rice	mitochondrion	26.02	11.47
Solyc12g042000.1.1	Tomato	nucleus	9.35	11.11
Bra032532.1-P	Field mustard	nucleus	45.53	9.92
KXG22233	Sorghum	nucleus	26.02	9.3
HORVU1Hr1G069020.11	Barley	plastid	26.42	9.3
Solyc08g023280.2.1	Tomato	nucleus	36.59	9.02
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	23.98	8.97
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	23.98	8.89
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	23.58	8.84
TraesCS1D01G304600.1	Wheat	nucleus, plastid	27.24	8.72
TraesCS1B01G315300.1	Wheat	plastid	27.24	8.71
HORVU0Hr1G002630.3	Barley	mitochondrion	23.58	8.66
CDY32524	Canola	cytosol	37.8	8.5
TraesCS1A01G304700.1	Wheat	nucleus	27.64	8.36
HORVU2Hr1G088910.1	Barley	plastid	10.16	6.53
Solyc09g066090.2.1	Tomato	nucleus	2.85	3.21

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf	ncoils:Coil
GO:GO:0000724	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005886	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006464	GO:GO:0006629	GO:GO:0006950	GO:GO:0006974	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031436	GO:GO:0035066	GO:GO:0035067	GO:GO:0042127
GO:GO:0045717	GO:GO:0045944	GO:GO:0070531	GO:GO:0071158	InterPro:IPR001357	InterPro:IPR036420
UniProt:K4DEZ2	PFAM:PF16589	PFscan:PS50172	PANTHER:PTHR13763	SMART:SM00292	SUPFAM:SSF52113
EnsemblPlantsGene:Solyc12g041980.1	EnsemblPlants:Solyc12g041980.1.1	UniParc:UPI000276A988	:	:	:

Description

No Description!

Coordinates

chr12:+:42023608..42025823

Molecular Weight (calculated)

27380.9 Da

IEP (calculated)

5.716

GRAVY (calculated)

-0.120

Length

246 amino acids

Sequence
(BLAST)

001: MWRRGLLRTT EQLTFWARSS DGPKEWVLCG SALSSEDKYM LVKFDDMCGA TACKFWRPNV THVVATTDVK GACTRTMKFL MAILSGKWIP TMDWVKACVA
101: ANGPVNEEHY EISLVNYGRS GGPKAGRLMA SANGPKLFDG FEFYFIGDFM PDYKSDLLDL VEKAGGTVIQ SEEQLVKQNH AAQGTQPSSL VVYNCDLSQG
201: CFEEKIRILL QRLAEAEDLA EQIGSQTVQH TWILESIAAC KLVPFC

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.