Factsheet for TraesCS2B01G163200.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

mitochondrion 3
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	74.7	75.38
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	73.04	73.93
HORVU0Hr1G002630.3	Barley	mitochondrion	62.65	62.09
TraesCS1B01G315000.1	Wheat	nucleus	40.66	53.89
TraesCS1B01G315300.1	Wheat	plastid	60.69	52.41
OQU85242	Sorghum	nucleus	24.4	38.66
Os05t0486600-01	Rice	mitochondrion	31.48	37.46
Zm00001d017078_P002	Maize	cytosol	28.01	35.23
KXG22233	Sorghum	nucleus	29.97	28.92
VIT_07s0005g03940.t01	Wine grape	plastid	17.92	28.4
GSMUA_Achr8P13610_001	Banana	cytosol	22.89	27.79
Solyc05g016230.2.1	Tomato	nucleus	18.07	26.73
Solyc09g066090.2.1	Tomato	nucleus	8.73	26.61
Solyc12g042000.1.1	Tomato	nucleus	8.13	26.09
Solyc09g066080.1.1	Tomato	cytosol	9.04	24.59
Solyc12g041980.1.1	Tomato	mitochondrion	8.89	23.98
CDY68257	Canola	mitochondrion, plastid	7.98	22.75
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	17.77	20.67
KRG95712	Soybean	nucleus	20.78	20.44
KRH67433	Soybean	nucleus	20.48	20.06
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	19.28	18.23
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	18.98	17.87
CDY10084	Canola	vacuole	18.67	17.79
AT1G04020.1	Thale cress	nucleus	18.52	17.25
TraesCS1B01G343100.2	Wheat	nucleus	18.83	12.49
Bra032532.1-P	Field mustard	nucleus	18.67	10.98
CDY32524	Canola	cytosol	17.92	10.88

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732
InterPro:IPR036420	PFAM:PF13771	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF6
SMART:SM00292	SUPFAM:SSF52113	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2B01G163200	EnsemblPlants:TraesCS2B01G163200.1	InterPro:Znf_RING/FYVE/PHD
TIGR:cd00027	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:135680835..135686494

Molecular Weight (calculated)

73631.2 Da

IEP (calculated)

6.602

GRAVY (calculated)

-0.433

Length

664 amino acids

Sequence
(BLAST)

001: MPTSSATMWR WWLAMVSTLW SWWSGAVLAM WQLRRLRWRN DEEMGTNSAA RTDMLFNIEI QPGYADPESL RHVWNKSASP VKGRKRKFGV DATKGESPGV
101: NASNTGDHLR SCRKGKGPRK RARLVDKEGA TGLGRVQTPT GLYEDECAFC QSFRTSEPVH GKMVLYHNGR IVSNDEADVT NAIYVHFKCM VWAPKVKSND
201: DGTFENVERE IERGSRWDCS RCNLRGAALD CYRAGCPNTY HVPCAFMIPE CRWDVVNLHV WCPVHAPPDE MSSPTIETGI LSPVPQNQSP ANEISADCQM
301: EDNQINPLLG NEMSSPIIGS DIPSTVLQNH SSNCPAKEIS VDCQMEDKQF NPLVTSNSPL PGQVPGQYLI KEGISALHRG EDLQVDQLNT SSSSSPQGQC
401: TDKEGISTNY RAEEKLVNQS STPLHQWVLL GIALSASEKD SLKEFASLTS STLAEEWDKT VTHVIVGRNA GYACGTSYEV LMAILSGKWV VAAGWVVDFL
501: VERISGPNRC LAKLIPSPEI SYEVKFYDGP RTSIDGPAKG RAGAAEGARK LLSGLHFCFS AYMHPEDRKD IQNLIAAGGG QVLEGISPDG LRENLKRNPA
601: EVYFIYHGGP PRTPTSDFDL ELQECNKYVR SGARMIKHLQ LFDAIQYYDA RMLEPTGVFT KICK

Best Arabidopsis Sequence Match ( AT1G04020.2 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKG KRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.