Factsheet for TraesCS1B01G315000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G304000.1	Wheat	nucleus	83.63	80.11
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	53.89	40.66
TraesCS1B01G315300.1	Wheat	plastid	58.48	38.1
OQU85242	Sorghum	nucleus	31.34	37.47
Os05t0486600-01	Rice	mitochondrion	41.52	37.28
Zm00001d017078_P002	Maize	cytosol	34.93	33.14
VIT_07s0005g03940.t01	Wine grape	plastid	24.95	29.83
GSMUA_Achr8P13610_001	Banana	cytosol	29.74	27.24
KXG22233	Sorghum	nucleus	36.53	26.6
Solyc12g042000.1.1	Tomato	nucleus	10.98	26.57
Solyc09g066090.2.1	Tomato	nucleus	11.18	25.69
Solyc05g016230.2.1	Tomato	nucleus	22.36	24.94
Solyc09g066080.1.1	Tomato	cytosol	11.78	24.18
Solyc12g041980.1.1	Tomato	mitochondrion	11.78	23.98
CDY68257	Canola	mitochondrion, plastid	10.18	21.89
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	24.55	21.54
KRG95712	Soybean	nucleus	26.35	19.56
KRH67433	Soybean	nucleus	26.35	19.47
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	25.75	18.38
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	25.75	18.3
CDY10084	Canola	vacuole	24.35	17.5
AT1G04020.1	Thale cress	nucleus	24.75	17.39
Bra032532.1-P	Field mustard	nucleus	24.35	10.81
TraesCS1B01G343100.2	Wheat	nucleus	21.56	10.79
CDY32524	Canola	cytosol	22.36	10.24

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732
InterPro:IPR036420	PFAM:PF13771	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF6
SMART:SM00292	SUPFAM:SSF52113	EnsemblPlantsGene:TraesCS1B01G315000	EnsemblPlants:TraesCS1B01G315000.1	InterPro:Znf_RING/FYVE/PHD	TIGR:cd00027
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:539574702..539585468

Molecular Weight (calculated)

55209.2 Da

IEP (calculated)

7.065

GRAVY (calculated)

-0.419

Length

501 amino acids

Sequence
(BLAST)

001: MGSGSASARG DVELREIAPP SGCAAAVAGG RPSSIHRAEG ASTGVNASNT GQQLPSCTKG KGPGKHAKLK DNEGATGLGR VQTPVGIFED ECIFCHSFRT
101: SEPCHGPMVL YHDRRIMTND KGNPTNAVYV HEKCIVWAPR VQSSGGTFKN VENEIKRASR WECSRCKLRG AALGCYYGRC RKTYHVPCAV MIPECRWDVE
201: GRHVWCPNHA PHDDMSSPPT MESDIVLQVD QLNTSSCSLS QGQCSEKERI SSNYQREQNL QNQSSTLVDQ WVLLGISLSA SEEDSLKEFA SLTNSTLVED
301: WDKNVTHVIV GRNTNTACVR SYAVLMAILY GKWIVRAGWI MDFLVQRIPH PETPYEMTFY GGLHTSISGP TKGRARAAEG APKLFSGLNF CFSDYLHVED
401: LEEFQNLIAA GGGLALQGVS PDSLPEIRSR IPGKVYYIYH GGPPRNSTWY FKDVHQNQME ESVEYGKSGA QVISHLKLYD AILSYDARIL EPGRSFTNMC
501: E

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.