Factsheet for Solyc06g008210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	93.73	93.33
Solyc09g066080.1.1	Tomato	cytosol	23.79	68.44
Solyc12g041980.1.1	Tomato	mitochondrion	22.36	63.82
Solyc05g016230.2.1	Tomato	nucleus	38.03	59.47
Solyc09g066090.2.1	Tomato	nucleus	15.81	50.92
VIT_07s0005g03940.t01	Wine grape	plastid	28.77	48.21
Solyc12g042000.1.1	Tomato	nucleus	12.68	43.0
KRG95712	Soybean	nucleus	41.17	42.81
KRH67433	Soybean	nucleus	41.17	42.63
Os04t0512400-01	Rice	cytosol	35.33	39.43
EES12490	Sorghum	cytosol, nucleus, plasma membrane	33.9	38.2
CDY10084	Canola	vacuole	37.18	37.45
GSMUA_Achr8P12560_001	Banana	nucleus	33.76	37.21
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	34.33	37.02
AT1G04020.1	Thale cress	nucleus	36.32	35.76
HORVU2Hr1G088840.1	Barley	nucleus	31.62	35.69
TraesCS2A01G384900.1	Wheat	nucleus	31.34	35.66
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	31.48	35.08
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	27.49	33.8
CDY68257	Canola	mitochondrion, plastid	10.4	31.33
OQU85242	Sorghum	nucleus	18.23	30.55
HORVU2Hr1G088910.1	Barley	plastid	16.52	30.29
GSMUA_Achr8P13610_001	Banana	cytosol	22.79	29.25
Os05t0486600-01	Rice	mitochondrion	21.51	27.06
Zm00001d017078_P002	Maize	cytosol	20.09	26.7
TraesCS1B01G315000.1	Wheat	nucleus	18.38	25.75
TraesCS1D01G304000.1	Wheat	nucleus	18.95	25.43
Bra032532.1-P	Field mustard	nucleus	37.75	23.47
CDY32524	Canola	cytosol	35.04	22.49
KXG22233	Sorghum	nucleus	21.37	21.8
Solyc08g023280.2.1	Tomato	nucleus	29.91	21.04
HORVU1Hr1G069020.11	Barley	plastid	20.51	20.6
HORVU0Hr1G002630.3	Barley	mitochondrion	19.37	20.3
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	18.66	19.91
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	18.38	19.66
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	18.23	19.28
TraesCS1B01G315300.1	Wheat	plastid	20.8	18.99
TraesCS1D01G304600.1	Wheat	nucleus, plastid	20.66	18.88
TraesCS1A01G304700.1	Wheat	nucleus	20.8	17.96

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0000724	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005886	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006629	GO:GO:0006950	GO:GO:0006974
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031436	GO:GO:0035066
GO:GO:0035067	GO:GO:0042127	GO:GO:0045717	GO:GO:0045944	GO:GO:0046872	GO:GO:0070531
GO:GO:0071158	InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420
UniProt:K4C3K1	PFAM:PF00097	PFAM:PF00533	PFAM:PF13771	PFAM:PF16589	ScanProsite:PS00518
PFscan:PS50089	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184
SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc06g008210.2	EnsemblPlants:Solyc06g008210.2.1	UniParc:UPI0002766537
InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:2089179..2096386

Molecular Weight (calculated)

78070.3 Da

IEP (calculated)

7.148

GRAVY (calculated)

-0.343

Length

702 amino acids

Sequence
(BLAST)

001: MAAEAQSIAR FLNPLAFHIQ KLGLELKCPL CLNLLTKPML LPCDHIFCNF CVPSSTQVQC ECPLCKHQYV DQEIRAVPHM ESMISIFRSL DATCNAKVFQ
101: FQSPDAGRPL EQSPVSVNAD KSRNEQTVKA TIRNNDPSKE IQRHNEHGMP WNVVNHLSVL PSSDRKKDSK NDGYNAEEID LIQFQQQSPG SAHSSDSNKD
201: IVKETSELRV MKTNAAKRLV EDSSDVVPFL KKEDSFEGLM HHTAMHENVF HERDVKRQKK LSYGLPEMAL QSHDHNQQRE SCSRIIANSD CNLTCKLSES
301: SFVAHPQEVS DQHLLEGSAC AFCLKSKITE GTGPMLHYAN GREVVGDATS LSKAIPVHMK CIDWAPQVYY DGEIIKNLEA ELARASKLKC SGCGLKGAAL
401: GCLVKSCRRS YHMPCAFEMQ NCRWDTDNFV MLCPSHKSVK FPSEKSKSRK RANIEARTEP APITSERLNF WATSSDGPKE WVLCGSALSS EEKYMLVKFA
501: NVCGATVCKS WNPSVTHVIA ATDEKGACTR TLKVLMAILG GKWILTIDWI KACVQENYPV NEEAYELSLD NHGCFGGPKI GRLRASSNAP KLFDGLKFYL
601: SGDYVPAYRT DLLDLVENAG GSIIHTKEQL ISQTVATQTA SSACLVVYSS DPPRGCEFGE ERNILLQRQA NAEELAKPLG CQVIQHTWIL ESIATCKLVP
701: FC

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.