CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017078_P002	Maize	cytosol	65.16	51.7
Os05t0486600-01	Rice	mitochondrion	46.06	34.59
KXG22233	Sorghum	nucleus	56.56	34.45
TraesCS1B01G315000.1	Wheat	nucleus	37.47	31.34
TraesCS1D01G304000.1	Wheat	nucleus	36.99	29.64
VIT_07s0005g03940.t01	Wine grape	plastid	26.97	26.97
Solyc09g066090.2.1	Tomato	nucleus	13.84	26.61
HORVU1Hr1G069020.11	Barley	plastid	42.96	25.75
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	39.62	25.23
HORVU0Hr1G002630.3	Barley	mitochondrion	40.33	25.22
GSMUA_Achr8P13610_001	Banana	cytosol	32.7	25.05
Solyc05g016230.2.1	Tomato	nucleus	26.73	24.94
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	38.9	24.85
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	38.66	24.4
Solyc12g042000.1.1	Tomato	nucleus	11.93	24.15
TraesCS1D01G304600.1	Wheat	nucleus, plastid	44.15	24.09
TraesCS1B01G315300.1	Wheat	plastid	44.15	24.06
Solyc09g066080.1.1	Tomato	cytosol	13.6	23.36
Solyc12g041980.1.1	Tomato	mitochondrion	13.37	22.76
TraesCS1A01G304700.1	Wheat	nucleus	44.15	22.76
EES12490	Sorghum	cytosol, nucleus, plasma membrane	29.36	19.74
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	30.55	18.23
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	30.07	17.87
KRG95712	Soybean	nucleus	28.16	17.48
KRH67433	Soybean	nucleus	26.97	16.67
CDY10084	Canola	vacuole	26.01	15.64
CDY68257	Canola	mitochondrion, plastid	8.59	15.45
AT1G04020.1	Thale cress	nucleus	26.25	15.43
EES18483	Sorghum	nucleus	24.34	10.24
Bra032532.1-P	Field mustard	nucleus	24.82	9.21
CDY32524	Canola	cytosol	23.39	8.96

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	UniProt:A0A1Z5RNB3	InterPro:BRCA1-associated	InterPro:BRCT_dom	ncoils:Coil
InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872
InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732	EnsemblPlants:OQU85242	ProteinID:OQU85242	ProteinID:OQU85242.1
PFAM:PF13771	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF6	EnsemblPlantsGene:SORBI_3004G201200
UniParc:UPI000B8B965C	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:55290165..55295237

Molecular Weight (calculated)

46603.8 Da

IEP (calculated)

6.058

GRAVY (calculated)

-0.438

Length

419 amino acids

Sequence
(BLAST)

001: MSRKRALSEE NEGATSLKSL STPINLFEDE CVFCHSFRTS LFHGPMVRYL KGRVVSIDEG NSSDAIYVHR KCLEWASGVW FKGDIVMNFE PEIRRALKLT
101: CRRCGLKGAA LGCYYDPCLT SFHVPCAVQT IGCRWDVDGY VLCPEHVSNA LPCDNLGTQT KENYNASSLD QSRRADKEGN FDYHNRENQQ TDQLNTSNAS
201: SLTQSHHCHE DGISTNCSRA GEQTDQLNSS AEEKDFMQKF ASWTNMTLAK EWGENVTHVI LGKGVADCLQ LNPGPEASYE LAASKQGRIR ASEGAPKLFS
301: GLCFCLSDFM SRDNRDSMRD LIAAAGGRMM LEKRDLHLLL KNPDHSSSSS VKPRPCYFVY DADSPGEFSV SSLRKEMEEA REQAAAGAQL ICHLRVLDAV
401: AAFDAEILVV AKEDRFITS

Best Arabidopsis Sequence Match ( AT1G04020.2 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKG KRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.