Factsheet for PGSC0003DMT400038153

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	93.33	93.73
VIT_07s0005g03940.t01	Wine grape	plastid	29.22	49.16
KRG95712	Soybean	nucleus	41.28	43.11
KRH67433	Soybean	nucleus	41.28	42.92
Os04t0512400-01	Rice	cytosol	35.04	39.27
EES12490	Sorghum	cytosol, nucleus, plasma membrane	33.62	38.04
CDY10084	Canola	vacuole	37.02	37.45
GSMUA_Achr8P12560_001	Banana	nucleus	33.33	36.89
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	33.9	36.71
HORVU2Hr1G088840.1	Barley	nucleus	31.49	35.69
TraesCS2A01G384900.1	Wheat	nucleus	31.21	35.66
AT1G04020.1	Thale cress	nucleus	36.03	35.62
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	31.35	35.08
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	27.38	33.8
CDY68257	Canola	mitochondrion, plastid	10.21	30.9
OQU85242	Sorghum	nucleus	17.87	30.07
GSMUA_Achr8P13610_001	Banana	cytosol	23.26	29.98
HORVU2Hr1G088910.1	Barley	plastid	16.17	29.77
Os05t0486600-01	Rice	mitochondrion	21.13	26.7
Zm00001d017078_P002	Maize	cytosol	19.57	26.14
TraesCS1B01G315000.1	Wheat	nucleus	18.3	25.75
TraesCS1D01G304000.1	Wheat	nucleus	18.58	25.05
Bra032532.1-P	Field mustard	nucleus	37.59	23.47
CDY32524	Canola	cytosol	35.04	22.58
KXG22233	Sorghum	nucleus	21.13	21.66
HORVU0Hr1G002630.3	Barley	mitochondrion	19.29	20.3
HORVU1Hr1G069020.11	Barley	plastid	20.0	20.17
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	18.3	19.6
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	18.01	19.36
PGSC0003DMT400013749	Potato	nucleus	28.94	19.3
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	17.87	18.98
TraesCS1B01G315300.1	Wheat	plastid	20.43	18.73
TraesCS1D01G304600.1	Wheat	nucleus, plastid	20.28	18.62
TraesCS1A01G304700.1	Wheat	nucleus	20.43	17.71

Protein Annotations

EntrezGene:102589099	MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom
InterPro:BRCT_dom_sf	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0046872	InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420
UniProt:M1B6E8	PFAM:PF00097	PFAM:PF00533	PFAM:PF13771	PFAM:PF16589	EnsemblPlantsGene:PGSC0003DMG400014714
PGSC:PGSC0003DMG400014714	EnsemblPlants:PGSC0003DMT400038153	ScanProsite:PS00518	PFscan:PS50089	PFscan:PS50172	PFscan:PS51805
PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184	SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850
UniParc:UPI000296CCB3	RefSeq:XP_006364566.1	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

ATBARD1/BARD1 [Source:PGSC_GENE;Acc:PGSC0003DMG400014714]

Coordinates

chr6:+:1816712..1824239

Molecular Weight (calculated)

78378.6 Da

IEP (calculated)

7.003

GRAVY (calculated)

-0.342

Length

705 amino acids

Sequence
(BLAST)

001: MAAEAQSIAR FLNPLAFHIQ KLGLELKCPL CLNLLTKPML LPCDHIFCNF CVPSSTQVQC ECPLCKHQYV DQEIRAVPHM ESMISIFRSL DATCNAKVFQ
101: FQSPDAGRSL EQSPISVNAD KSRNEQSVKA IIRSNNPSKE IHRHNEHGMP WNVVNHLSVL PSSDRKEDSK NDGYNAEEID LNQFQQQSPG SAHSSDSNKD
201: IVKETSELRV MKTNAAKRLV EDSSDVVPFL KKEDSSDVVE GLMHHTVMHE NVFHERDVKR QKKLSYGLPE MALQSHDHNQ QRESCSRIIA NSDCNLTCKL
301: SESSFVAHPQ EVSDQHLLEG SACAFCLKSK ITEGTGPMLH YANGREVVGD ATSLSKAIPV HMKCIDWAPQ VYYDGEIIKN LEAELARASK LKCSGCGLKG
401: AALGCLVKSC RRSYHMPCAF EMQDCRWDTD NFVMLCPSHK SVKFPSEKSK SRKRAKIEAR PEPAPITSER LNFWATSSDG PKEWVLCGSA LSSEEKYMLV
501: KFANMCGATV CKSWNPSVTH VIAATDENGA CTRTLKVLMA ILGGKWILTI DWIKACIQEN YPVNEEAYEV SLDNHGCFGG PKVGRLRASS NAPKLFDGLK
601: FYLSGDYVPA YRIDLLDLVE NAGGSIIHTK EQLISQTDAT QTTSSACLVV YNSDPPRGCA FGEERNVLLQ RQAKAEELAK PLGCQVIQHT WILESIATCK
701: LVPFC

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.