CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85242	Sorghum	nucleus	34.45	56.56
Os05t0486600-01	Rice	mitochondrion	34.3	42.29
TraesCS1B01G315000.1	Wheat	nucleus	26.6	36.53
TraesCS1D01G304000.1	Wheat	nucleus	26.31	34.61
VIT_07s0005g03940.t01	Wine grape	plastid	19.62	32.22
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	30.23	31.61
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	30.09	31.55
HORVU0Hr1G002630.3	Barley	mitochondrion	29.8	30.6
HORVU1Hr1G069020.11	Barley	plastid	30.81	30.33
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	28.92	29.97
GSMUA_Achr8P13610_001	Banana	cytosol	23.55	29.62
Solyc09g066090.2.1	Tomato	nucleus	9.3	29.36
Solyc12g042000.1.1	Tomato	nucleus	8.72	28.99
Solyc05g016230.2.1	Tomato	nucleus	18.75	28.73
TraesCS1D01G304600.1	Wheat	nucleus, plastid	31.54	28.26
TraesCS1B01G315300.1	Wheat	plastid	31.25	27.96
Solyc09g066080.1.1	Tomato	cytosol	9.59	27.05
TraesCS1A01G304700.1	Wheat	nucleus	31.4	26.57
Solyc12g041980.1.1	Tomato	mitochondrion	9.3	26.02
EES12490	Sorghum	cytosol, nucleus, plasma membrane	22.24	24.56
CDY68257	Canola	mitochondrion, plastid	7.41	21.89
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	21.8	21.37
KRG95712	Soybean	nucleus	20.93	21.33
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	21.66	21.13
KRH67433	Soybean	nucleus	20.49	20.8
CDY10084	Canola	vacuole	18.9	18.65
AT1G04020.1	Thale cress	nucleus	18.75	18.09
EES18483	Sorghum	nucleus	18.6	12.85
Bra032532.1-P	Field mustard	nucleus	18.46	11.25
CDY32524	Canola	cytosol	17.3	10.88

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	UniProt:A0A1B6P987	InterPro:BRCA1-associated	InterPro:BRCT_dom
InterPro:BRCT_dom_sf	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0046872	InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420	EnsemblPlants:KXG22233
ProteinID:KXG22233	ProteinID:KXG22233.1	PFAM:PF00533	PFAM:PF13771	PFscan:PS50172	PFscan:PS51805
PANTHER:PTHR13763	PANTHER:PTHR13763:SF6	SMART:SM00249	SMART:SM00292	EnsemblPlantsGene:SORBI_3009G177600	SUPFAM:SSF52113
UniParc:UPI00081AC0C6	InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:53254523..53258232

Molecular Weight (calculated)

76719.9 Da

IEP (calculated)

7.184

GRAVY (calculated)

-0.666

Length

688 amino acids

Sequence
(BLAST)

001: MRGKRKINSP TQPGFKQNTD ASQLKGQILK AVADAGGLPS PDSKQSKIGA GGPNKRSRKE SNVSKKLVLY QDAGRATELK RLPTPINLFE DECVFCHSFR
101: TTELVHGPMV RYLNGKILST DKGNSSNAIY VHKKCLEWAP KVWFDGDNVM SLESEIRRAS RLRCKRCGLL GAALGCYEKH CRKSYHVPCA VQIIDCRWDV
201: AKGYVLCPEH VSKTLPCDKL RTHRKENYNS SLHQSHCSCR EEPFTNFGEE GQQSDLHNTT SSFLPVGKCA EKEGNLYVHH RETQQTDQLN TSNTSLFPQS
301: QPSHKEEISP NSPRGGKQMD QHNSMSSCLP GSLYTKKEEN FDNHQRKNQQ TDQLNISNPF YLPRSQHSQK EGISTNNSRY GQIDQLDTSS SSSLPLGQHS
401: YDKATSNNCE RDNQRTHECN TSNLSSPQSC HPAEGISIAF QGEETTADQP DTSSCPSDQL VLFGLSLGVS EKDFLQKFAC LTNAKLTEEW SKDVTHVIVA
501: KGADSSWSRS FEALMAILFG RWVVHFEWVA GCFGTALPVP EAAYEVAFSM DSVRTINGPK KGRMRAAEGA PNLFSGLCFC LSDYMNPDNR DRMRDLIAAA
601: EGRVLERRDL HLQQIKNPDD DSSVRPYFVY DVDAPPGEFS LSTLHKEMEE VREQAAAGAQ VICHLKVLDA IAAYDAEILN VKDDSFTS

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.