Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G139100.2 | Wheat | mitochondrion, plastid | 81.4 | 81.16 |
| TraesCS2B01G163200.1 | Wheat | golgi, plasma membrane | 73.93 | 73.04 |
| HORVU0Hr1G002630.3 | Barley | mitochondrion | 69.66 | 68.21 |
| TraesCS1D01G304000.1 | Wheat | nucleus | 41.92 | 52.58 |
| TraesCS1D01G304600.1 | Wheat | nucleus, plastid | 59.15 | 50.52 |
| OQU85242 | Sorghum | nucleus | 24.85 | 38.9 |
| Os05t0486600-01 | Rice | mitochondrion | 33.08 | 38.89 |
| Zm00001d017078_P002 | Maize | cytosol | 29.12 | 36.17 |
| KXG22233 | Sorghum | nucleus | 31.55 | 30.09 |
| VIT_07s0005g03940.t01 | Wine grape | plastid | 18.6 | 29.12 |
| GSMUA_Achr8P13610_001 | Banana | cytosol | 22.87 | 27.42 |
| Solyc09g066090.2.1 | Tomato | nucleus | 8.99 | 27.06 |
| Solyc05g016230.2.1 | Tomato | nucleus | 17.99 | 26.28 |
| Solyc12g042000.1.1 | Tomato | nucleus | 8.23 | 26.09 |
| Solyc09g066080.1.1 | Tomato | cytosol | 8.84 | 23.77 |
| CDY68257 | Canola | mitochondrion, plastid | 8.38 | 23.61 |
| Solyc12g041980.1.1 | Tomato | mitochondrion | 8.84 | 23.58 |
| KRG95712 | Soybean | nucleus | 21.34 | 20.74 |
| TraesCS2D01G381600.1 | Wheat | cytosol, nucleus, plasma membrane | 19.51 | 20.32 |
| KRH67433 | Soybean | nucleus | 20.88 | 20.21 |
| Solyc06g008210.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 19.66 | 18.38 |
| CDY10084 | Canola | vacuole | 19.36 | 18.22 |
| PGSC0003DMT400038153 | Potato | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 19.36 | 18.01 |
| AT1G04020.1 | Thale cress | nucleus | 19.21 | 17.67 |
| TraesCS1D01G331700.1 | Wheat | nucleus | 18.45 | 12.58 |
| Bra032532.1-P | Field mustard | nucleus | 19.51 | 11.34 |
| CDY32524 | Canola | cytosol | 18.75 | 11.24 |
Protein Annotations
| MapMan:14.3.1.1 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10190 | InterPro:BRCA1-associated | InterPro:BRCT_dom | InterPro:BRCT_dom_sf |
| InterPro:EPHD | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0006974 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR001357 | InterPro:IPR013083 | InterPro:IPR034732 |
| InterPro:IPR036420 | PFAM:PF00533 | PFAM:PF13771 | PFscan:PS50172 | PFscan:PS51805 | PANTHER:PTHR13763 |
| PANTHER:PTHR13763:SF6 | SMART:SM00292 | SUPFAM:SSF52113 | EnsemblPlantsGene:TraesCS2D01G142000 | EnsemblPlants:TraesCS2D01G142000.2 | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd00027 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:83814994..83819390
Molecular Weight (calculated)
71134.1 Da
IEP (calculated)
6.724
GRAVY (calculated)
-0.424
Length
656 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMRGRPRRG SRGITSSPPP GFGPAAAAAR PSSARSAGTN SAARTGMLFN VEIQPGYADP ESLRHVWNRS ASPMKGRKRK FGVDATKGES PGINASNTGE
101: HLRSCRKGKG PGKRARLVDK EGATGLGRVQ TPTGLYEDEC AFCQSFRTSE PVHGPLVLYH NGRIVSSDEA DATNAIYVHF KCMVWAPKVK SNDDGTFENV
201: ESEIERGSRW DCSRCNLRGA ALGCYRAGCP NTYHVPCAFM IPECRWDVEN LHVWCPMHAP PDEMSSPTIE TGILSPDPQN QSPANEISAD CQMEDNQINP
301: LLGNEMSSPI IGSDIPSTVL QNSCPAKEIS VDCQMEDKQF NPLVTSNSPL PGLVPGSSQY LIKEGISALH RGEDLQVDQL NTSSSSSPQG QCTDKEGIST
401: NYRAEDKLAN QSSTPLDQWV LLGIALSASE KDSLKEFASL TSSTLAQEWD KTVTHVIVGR NAGSRCGRSY EVQMAILSGK WVVAAGWVVD CLVERISGPK
501: PCLAKLIPSP EISYEVKFYD GARTSIDGPA KGRAGAAEGA RKLLSGLHFC FSAYMHPEDR EDIQNLIAAG GGQVLEGISP DGLRENLKRN PAEVYFIYHG
601: GPPRTPTSDF DLEVQECNKY VGSGARMIRH LQLFDAILCY DVLFLKPTGV FTKICK
101: HLRSCRKGKG PGKRARLVDK EGATGLGRVQ TPTGLYEDEC AFCQSFRTSE PVHGPLVLYH NGRIVSSDEA DATNAIYVHF KCMVWAPKVK SNDDGTFENV
201: ESEIERGSRW DCSRCNLRGA ALGCYRAGCP NTYHVPCAFM IPECRWDVEN LHVWCPMHAP PDEMSSPTIE TGILSPDPQN QSPANEISAD CQMEDNQINP
301: LLGNEMSSPI IGSDIPSTVL QNSCPAKEIS VDCQMEDKQF NPLVTSNSPL PGLVPGSSQY LIKEGISALH RGEDLQVDQL NTSSSSSPQG QCTDKEGIST
401: NYRAEDKLAN QSSTPLDQWV LLGIALSASE KDSLKEFASL TSSTLAQEWD KTVTHVIVGR NAGSRCGRSY EVQMAILSGK WVVAAGWVVD CLVERISGPK
501: PCLAKLIPSP EISYEVKFYD GARTSIDGPA KGRAGAAEGA RKLLSGLHFC FSAYMHPEDR EDIQNLIAAG GGQVLEGISP DGLRENLKRN PAEVYFIYHG
601: GPPRTPTSDF DLEVQECNKY VGSGARMIRH LQLFDAILCY DVLFLKPTGV FTKICK
001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG
Arabidopsis Description
ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.