Factsheet for TraesCS2D01G381600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G384900.1	Wheat	nucleus	93.33	95.3
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	84.6	93.34
HORVU2Hr1G088840.1	Barley	nucleus	88.41	89.55
HORVU2Hr1G088910.1	Barley	plastid	43.49	71.54
Os04t0512400-01	Rice	cytosol	63.33	63.43
EES12490	Sorghum	cytosol, nucleus, plasma membrane	60.0	60.67
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	60.95	58.99
VIT_07s0005g03940.t01	Wine grape	plastid	27.3	41.05
Solyc09g066080.1.1	Tomato	cytosol	15.71	40.57
GSMUA_Achr8P12560_001	Banana	nucleus	40.63	40.19
Solyc12g041980.1.1	Tomato	mitochondrion	15.4	39.43
Solyc05g016230.2.1	Tomato	nucleus	27.78	38.98
Solyc09g066090.2.1	Tomato	nucleus	12.38	35.78
KRG95712	Soybean	nucleus	35.71	33.33
KRH67433	Soybean	nucleus	35.4	32.89
Solyc12g042000.1.1	Tomato	nucleus	10.48	31.88
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	35.08	31.48
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	35.08	31.35
AT1G04020.1	Thale cress	nucleus	33.49	29.59
CDY10084	Canola	vacuole	32.22	29.12
CDY68257	Canola	mitochondrion, plastid	9.52	25.75
TraesCS1D01G304000.1	Wheat	nucleus	21.27	25.62
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	20.32	19.51
TraesCS1D01G331700.1	Wheat	nucleus	29.52	19.33
Bra032532.1-P	Field mustard	nucleus	32.7	18.25
TraesCS1D01G304600.1	Wheat	nucleus, plastid	21.75	17.84
CDY32524	Canola	cytosol	29.84	17.18

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR034732	InterPro:IPR036420	PFAM:PF00533	PFAM:PF13771	PFscan:PS50089	PFscan:PS50172
PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184	SMART:SM00292	SUPFAM:SSF52113
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS2D01G381600	EnsemblPlants:TraesCS2D01G381600.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	TIGR:cd00027
TIGR:cd15571	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:485842348..485845979

Molecular Weight (calculated)

68244.2 Da

IEP (calculated)

5.955

GRAVY (calculated)

-0.272

Length

630 amino acids

Sequence
(BLAST)

001: MEGMRRFVNP LKLNVQKMEL ELTCPVCLKL LSAPTMLPCC HTCCSKCATP QAMNGHSCAI CKLAYHPQDL RHASQIEALV NIQRSISSTV SSMSLQLGTQ
101: PAIHVAKATS QGTPESGRTS SHNLVASNLP CNQASGPADE NVGVVQAMDP APGNRTNDVA VEPTVIVQTG PCGSQTPVGS GDLECDSNDL EGELITSGSP
201: PQSTLKRGPN ITDDSTRGLK RQKSSDQSEK MEDTNVIANI NAEQPSMNAA WKCEFCHSSE ISECTGPLLH CLDEALVKDD QAWKSNVLHV HEKCAEWAPE
301: AYFEGDMIKK LESELARSSK MKCGICGLKG AALGCLFKSC RKSYHLPCAR GVSGCRWDEG EFVMLCPTHS SKRLPCERSN SKNKKAAQLQ QPSSETVLGD
401: SNSPFPMEMN ELWTSLCPTS EWVICGSALS DQDKEILDQF EYHSGVTTTN NWSSNVTHVL ANTNEDGACG RTRKVLLAIL AGKWVVNVNW LSACLEAKKP
501: VPEEPYEIRS DVHGAIDGPR IGRLRAMQKA PSLFSGLIFY FIGHPLTFKV ELDELIAAAG GSILGKADLS STSLIVYNKE VPKGCNEDAV DEVFSKREAE
601: ALDLATTFGC RVVPHTWVLD SIASCTLQPI

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.