Factsheet for GSMUA_Achr8P12560_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0512400-01	Rice	cytosol	47.88	48.49
EES12490	Sorghum	cytosol, nucleus, plasma membrane	43.64	44.62
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	44.11	43.16
VIT_07s0005g03940.t01	Wine grape	plastid	27.94	42.48
Solyc09g066080.1.1	Tomato	cytosol	16.01	41.8
TraesCS2A01G384900.1	Wheat	nucleus	40.19	41.49
HORVU2Hr1G088840.1	Barley	nucleus	40.03	41.0
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	40.19	40.63
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	36.11	40.28
Solyc12g041980.1.1	Tomato	mitochondrion	15.54	40.24
Solyc05g016230.2.1	Tomato	nucleus	27.16	38.53
Solyc09g066090.2.1	Tomato	nucleus	12.87	37.61
Solyc12g042000.1.1	Tomato	nucleus	11.93	36.72
KRG95712	Soybean	nucleus	38.15	36.0
KRH67433	Soybean	nucleus	37.99	35.69
GSMUA_Achr8P13610_001	Banana	cytosol	29.98	34.92
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	37.21	33.76
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	36.89	33.33
CDY10084	Canola	vacuole	35.16	32.14
AT1G04020.1	Thale cress	nucleus	35.16	31.42
HORVU2Hr1G088910.1	Barley	plastid	18.68	31.07
CDY68257	Canola	mitochondrion, plastid	10.2	27.9
GSMUA_Achr6P29980_001	Banana	nucleus	33.44	21.73
Bra032532.1-P	Field mustard	nucleus	35.79	20.19
CDY32524	Canola	cytosol	32.97	19.2

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr8G12560_001	EnsemblPlants:GSMUA_Achr8P12560_001	EnsemblPlants:GSMUA_Achr8T12560_001	InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR034732	InterPro:IPR036420	UniProt:M0TPV9	PFAM:PF00097	PFAM:PF00533	PFAM:PF13771
ScanProsite:PS00518	PFscan:PS50089	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1
SMART:SM00184	SMART:SM00249	SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850	UniParc:UPI0002952531
InterPro:Znf_C3HC4_RING-type	InterPro:Znf_PHD	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

Putative Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr8G12560_001]

Coordinates

chr8:+:9370071..9374239

Molecular Weight (calculated)

71031.9 Da

IEP (calculated)

7.012

GRAVY (calculated)

-0.336

Length

637 amino acids

Sequence
(BLAST)

001: MGDSEGFRRF VNPLLLNLQK MELELTCAIC LKLLKIPMLL PCNHMYCRAC IATSVTNAYD CAICKAAFRE QELRSAVHIE AIVSICKNMN SSVNAALKQG
101: PQVDISDIKM HSDGSPDSGY NNMNLKFEEE VLHVDEKRSG HVKSRTRLFG TVSTGKFNHK GETHEHKKDA SKKVRQEAGV NKFLTERHPC SPQSSGYQKD
201: SDYDSNDARS EPTTERLSPK VLSKRGPDSG ACQIEDDCII ESKKQNINYL HTEELVDCAF CHTSGATEAV GPMLHYLDGE QMTDDQALQA NVLHVHQRCI
301: EWAPQVYFVG ETAMNLEAEL ARASKIKCSH CGLKGAALGC YTKSCRRSYH VPCANDISGC RWDYEKFLLL CPVHSSNKLP CDRSINLLLI LLGVGARCHS
401: SPRMDQTSSM KHPGDAWTAS PCETREWMLC GSALSREDKD VLEDFVSLTG VTATSLWNSS ITHVIAATDE HGACSRTLKV LMAILAGKWV LRVDWLKACM
501: EAGHPVSEEP YEISHDIHGS FDGPRNGRMR AMQKAPKLFA ELTFYFNGYF MPNYKKYLEN LILAAGGRFL EKSEVVPMTF IVYSVEPPQG SDSNDLNEVI
601: RKRKEDAEAF AVKTCSRVIA HTWLLDAIAA CNLPRNI

Best Arabidopsis Sequence Match ( AT1G04020.2 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKG KRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.