CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95712	Soybean	nucleus	91.59	92.0
Solyc09g066080.1.1	Tomato	cytosol	19.62	54.51
Solyc12g041980.1.1	Tomato	mitochondrion	18.58	51.22
VIT_07s0005g03940.t01	Wine grape	plastid	30.68	49.64
Solyc05g016230.2.1	Tomato	nucleus	31.27	47.22
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	42.92	41.28
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	42.63	41.17
Solyc09g066090.2.1	Tomato	nucleus	12.98	40.37
CDY10084	Canola	vacuole	40.12	39.02
Os04t0512400-01	Rice	cytosol	35.25	38.0
GSMUA_Achr8P12560_001	Banana	nucleus	35.69	37.99
AT1G04020.1	Thale cress	nucleus	39.53	37.59
EES12490	Sorghum	cytosol, nucleus, plasma membrane	33.63	36.6
HORVU2Hr1G088840.1	Barley	nucleus	33.04	36.01
TraesCS2A01G384900.1	Wheat	nucleus	32.74	35.98
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	34.22	35.64
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	32.89	35.4
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	29.5	35.03
Solyc12g042000.1.1	Tomato	nucleus	10.47	34.3
HORVU2Hr1G088910.1	Barley	plastid	17.11	30.29
GSMUA_Achr8P13610_001	Banana	cytosol	23.75	29.43
CDY68257	Canola	mitochondrion, plastid	9.88	28.76
OQU85242	Sorghum	nucleus	16.67	26.97
TraesCS1B01G315000.1	Wheat	nucleus	19.47	26.35
TraesCS1D01G304000.1	Wheat	nucleus	20.06	26.0
Os05t0486600-01	Rice	mitochondrion	20.8	25.27
Zm00001d017078_P002	Maize	cytosol	19.47	25.0
Bra032532.1-P	Field mustard	nucleus	40.56	24.36
CDY32524	Canola	cytosol	37.61	23.31
HORVU1Hr1G069020.11	Barley	plastid	21.53	20.89
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	20.21	20.88
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	20.06	20.67
KXG22233	Sorghum	nucleus	20.8	20.49
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	20.06	20.48
HORVU0Hr1G002630.3	Barley	mitochondrion	19.62	19.85
TraesCS1B01G315300.1	Wheat	plastid	21.24	18.73
TraesCS1D01G304600.1	Wheat	nucleus, plastid	20.94	18.49
TraesCS1A01G304700.1	Wheat	nucleus	21.53	17.96
KRH11144	Soybean	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	35.4	16.81

Protein Annotations

EntrezGene:100784883	MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	UniProt:A0A0R0KQH6	EMBL:ACUP02002057
InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf	InterPro:EPHD	EnsemblPlantsGene:GLYMA_03G165600	GO:GO:0003674
GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	InterPro:IPR001357	InterPro:IPR001841
InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420	EnsemblPlants:KRH67433	ProteinID:KRH67433	ProteinID:KRH67433.1
PFAM:PF00533	PFAM:PF13771	PFAM:PF13920	PFAM:PF16589	ScanProsite:PS00518	PFscan:PS50089
PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184	SMART:SM00292
SUPFAM:SSF52113	SUPFAM:SSF57850	UniParc:UPI0002336E6C	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:38039529..38045137

Molecular Weight (calculated)

74408.0 Da

IEP (calculated)

6.962

GRAVY (calculated)

-0.322

Length

678 amino acids

Sequence
(BLAST)

001: MDDSGSKTKL LNPWMLHFQK LALELKCPLC LSLFKRPVLL PCNHLFCNSC LADCITAGSE CAVCKTTYAQ TDVRHIPFVE NVVAIYRSLD ATFCASLFQS
101: RSSGGGRVLE PCQTILNSTS SSLKTGKLPR NLTNLNEVGV GQTFKSKSVV HDKAEELELS CGRGKPNPMQ SSQMGLGGRE QCGVMEMDVN QVTQSAPDSP
201: PFCDTKGSDN DCSDQDSEHP LPPGRLENSS LNRASAGNGN LKERMGQLRS ESSVSETEGL ARDLKRQKNL DFKPGKDPGA PLPTNASIDL CPIGRICSFC
301: QSSKISEVTG PMLHYANGNL VTGDAAMKPN VVPVHRICID WAPQVYFDGE VVKNLKAEVA RGAKLKCSKC NLKGAALGCY VKSCRRTYHV PCAMDISDCR
401: WDHEDFLLLC PVHSNVKFPC EKIRSKKQAT QKHPTLSHLP SHHSNPLEAS HDDDVKLVFC GSALSNEEKV LLINYASKVG ATVTKFWTSN VTHVIAATDA
501: HGACSRTLKV LMAILNGRWV LKMDWIKACM EEVNPVEEEP YEINLDNQGC QGGPKAGRLR ALANEPKLFN GLKFYFSGDY VSTYKEDLEE LIEVGGGTVL
601: RSKEELESQR HECKGDSSQL LIVYNLDPPQ GCKLGEEVSI LWQRLNDAED LAANTLQVIG HTWILESIAA CKLQPFVN

Best Arabidopsis Sequence Match ( AT1G04020.2 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKG KRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.