Factsheet for GSMUA_Achr8P13610_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g03940.t01	Wine grape	plastid	29.07	37.95
Solyc09g066090.2.1	Tomato	nucleus	13.89	34.86
Solyc09g066080.1.1	Tomato	cytosol	15.36	34.43
Solyc05g016230.2.1	Tomato	nucleus	27.97	34.08
Solyc12g042000.1.1	Tomato	nucleus	12.8	33.82
OQU85242	Sorghum	nucleus	25.05	32.7
Solyc12g041980.1.1	Tomato	mitochondrion	14.63	32.52
GSMUA_Achr8P12560_001	Banana	nucleus	34.92	29.98
TraesCS1B01G315000.1	Wheat	nucleus	27.24	29.74
Zm00001d017078_P002	Maize	cytosol	28.15	29.17
TraesCS1D01G304000.1	Wheat	nucleus	27.42	28.68
CDY68257	Canola	mitochondrion, plastid	11.52	27.04
Os05t0486600-01	Rice	mitochondrion	27.24	26.7
KRG95712	Soybean	nucleus	29.43	23.85
KRH67433	Soybean	nucleus	29.43	23.75
KXG22233	Sorghum	nucleus	29.62	23.55
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	29.98	23.26
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	27.61	22.95
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	27.79	22.89
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	27.42	22.87
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	29.25	22.79
HORVU0Hr1G002630.3	Barley	mitochondrion	27.79	22.69
HORVU1Hr1G069020.11	Barley	plastid	28.34	22.17
CDY10084	Canola	vacuole	28.15	22.09
AT1G04020.1	Thale cress	nucleus	28.15	21.6
TraesCS1D01G304600.1	Wheat	nucleus, plastid	28.34	20.18
TraesCS1B01G315300.1	Wheat	plastid	28.34	20.16
TraesCS1A01G304700.1	Wheat	nucleus	29.62	19.93
GSMUA_Achr6P29980_001	Banana	nucleus	28.34	15.82
Bra032532.1-P	Field mustard	nucleus	28.7	13.91
CDY32524	Canola	cytosol	26.33	13.16

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr8G13610_001	EnsemblPlants:GSMUA_Achr8P13610_001	EnsemblPlants:GSMUA_Achr8T13610_001
InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420	UniProt:M0TQ64	PFAM:PF13771
PFAM:PF16589	PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00292
SUPFAM:SSF52113	TMHMM:TMhelix	UniParc:UPI0002958B0B	InterPro:Znf_RING/FYVE/PHD	:	:

Description

Putative BRCA1 C Terminus domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G13610_001]

Coordinates

chr8:-:10372045..10375483

Molecular Weight (calculated)

61323.1 Da

IEP (calculated)

8.140

GRAVY (calculated)

-0.169

Length

547 amino acids

Sequence
(BLAST)

001: MSESVNYILH LSVVLQTTKK SPTKTIKADS YASHEVRRPQ LSPSSVTGHP ITKDDGKTAV GSSQTRAGVQ KQKTSKRQKL NNKRVKNHTI QHVRTPSIVF
101: GDECAFCHSF RTTEASGPMC CYKDGRLVAM EEAGQSHVTH AHQKCIEWAP QIYFSGDTVK NLEVELRRAS KIKCSKCGLK GAALGCYFGS CPKSFHVPCA
201: VEIFDCRWDC VNFHVLCPNH SSEKLPCDDD GRLEKSSGTT HFPSVQIECR KSSGNLTEHQ SSEHHAAAVG VKNDRIFIGS ALMDSEKELL VKFASLVGGT
301: VTEMWRPDVT HVIASTNESS AYGRTHNVLM AILTGKWVLT TKWVKVCMEA GHFVWEEPYE VRFDMHGFTD GPPMRGRLGA MEKVPLLLFA GLSFRLSEHF
401: TLSCRQSLKE LVVTAGGVVL EDDILIPQDP FAIGFPALCF IYNEEPPQEY DPRGLAKVKD ERCEEAIDFF KKTGARVRGH TRVLDAIAAL DIRYLLMESA
501: PKVKMLMLLF CWLSLNFMIL LSMYYVVFVA LVDSWKHHLY IMLHLAW

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.