Factsheet for Solyc12g042000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g066090.2.1	Tomato	nucleus	38.65	36.7
Solyc05g016230.2.1	Tomato	nucleus	54.11	24.94
VIT_07s0005g03940.t01	Wine grape	plastid	34.3	16.95
CDY68257	Canola	mitochondrion, plastid	16.91	15.02
HORVU2Hr1G088910.1	Barley	plastid	26.57	14.36
GSMUA_Achr8P13610_001	Banana	cytosol	33.82	12.8
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	43.0	12.68
OQU85242	Sorghum	nucleus	24.15	11.93
GSMUA_Achr8P12560_001	Banana	nucleus	36.72	11.93
Os04t0512400-01	Rice	cytosol	36.23	11.92
EES12490	Sorghum	cytosol, nucleus, plasma membrane	35.75	11.88
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	35.75	11.37
CDY10084	Canola	vacuole	38.16	11.33
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	30.43	11.03
TraesCS1B01G315000.1	Wheat	nucleus	26.57	10.98
HORVU2Hr1G088840.1	Barley	nucleus	32.85	10.93
Os05t0486600-01	Rice	mitochondrion	29.47	10.93
TraesCS2A01G384900.1	Wheat	nucleus	31.88	10.7
KRG95712	Soybean	nucleus	34.78	10.67
AT1G04020.1	Thale cress	nucleus	36.23	10.52
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	31.88	10.48
KRH67433	Soybean	nucleus	34.3	10.47
TraesCS1D01G304000.1	Wheat	nucleus	26.09	10.32
Solyc09g066080.1.1	Tomato	cytosol	12.08	10.25
Zm00001d017078_P002	Maize	cytosol	25.12	9.85
Solyc12g041980.1.1	Tomato	mitochondrion	11.11	9.35
KXG22233	Sorghum	nucleus	28.99	8.72
HORVU1Hr1G069020.11	Barley	plastid	28.99	8.58
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	26.09	8.23
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	26.09	8.21
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	26.09	8.13
HORVU0Hr1G002630.3	Barley	mitochondrion	25.6	7.91
TraesCS1D01G304600.1	Wheat	nucleus, plastid	27.54	7.42
TraesCS1B01G315300.1	Wheat	plastid	27.54	7.41
TraesCS1A01G304700.1	Wheat	nucleus	28.02	7.13
Bra032532.1-P	Field mustard	nucleus	36.72	6.73
CDY32524	Canola	cytosol	34.78	6.58
Solyc08g023280.2.1	Tomato	nucleus	31.4	6.51

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	InterPro:BRCA1-associated	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR034732	UniProt:K4DEZ4
PFAM:PF13771	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00249	EnsemblPlantsGene:Solyc12g042000.1
EnsemblPlants:Solyc12g042000.1.1	UniParc:UPI000276A98A	InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:42012199..42016060

Molecular Weight (calculated)

23600.6 Da

IEP (calculated)

7.310

GRAVY (calculated)

0.113

Length

207 amino acids

Sequence
(BLAST)

001: MTLMIALTPQ VYYEGEIIKN LDTELARATK LKCSSCGMKG AALGCYMTSC RRSYHVPCAF EIQDCQWDME NFVMLCPVHK SVKFPSEKSK SIEHIRREMH
101: PKASPLVNNQ KSLSSFTWAA AFVVADRASS FSFVKEKYFV FFFFCKYIFS VLIDDELEDS FARLSLTSFL DEDGISVRTV EMFFALGAGG TSPATLLRMI
201: FSFRFEF

Best Arabidopsis Sequence Match ( AT1G04020.2 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKG KRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.