Factsheet for Solyc09g066090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g042000.1.1	Tomato	nucleus	36.7	38.65
Solyc05g016230.2.1	Tomato	nucleus	72.94	35.41
HORVU2Hr1G088910.1	Barley	plastid	33.49	19.06
VIT_07s0005g03940.t01	Wine grape	plastid	35.32	18.38
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	50.92	15.81
GSMUA_Achr8P13610_001	Banana	cytosol	34.86	13.89
OQU85242	Sorghum	nucleus	26.61	13.84
CDY10084	Canola	vacuole	43.58	13.63
Os04t0512400-01	Rice	cytosol	38.99	13.51
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	35.32	13.49
CDY68257	Canola	mitochondrion, plastid	14.22	13.3
KRG95712	Soybean	nucleus	40.83	13.19
EES12490	Sorghum	cytosol, nucleus, plasma membrane	37.61	13.16
KRH67433	Soybean	nucleus	40.37	12.98
GSMUA_Achr8P12560_001	Banana	nucleus	37.61	12.87
HORVU2Hr1G088840.1	Barley	nucleus	36.7	12.86
TraesCS2A01G384900.1	Wheat	nucleus	36.24	12.8
AT1G04020.1	Thale cress	nucleus	41.28	12.62
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	37.61	12.6
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	35.78	12.38
Os05t0486600-01	Rice	mitochondrion	30.73	12.01
TraesCS1B01G315000.1	Wheat	nucleus	25.69	11.18
Zm00001d017078_P002	Maize	cytosol	27.06	11.17
TraesCS1D01G304000.1	Wheat	nucleus	25.23	10.52
KXG22233	Sorghum	nucleus	29.36	9.3
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	27.98	9.27
HORVU0Hr1G002630.3	Barley	mitochondrion	28.44	9.25
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	27.06	8.99
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	26.61	8.73
HORVU1Hr1G069020.11	Barley	plastid	27.98	8.73
TraesCS1D01G304600.1	Wheat	nucleus, plastid	30.73	8.72
CDY32524	Canola	cytosol	42.2	8.41
Bra032532.1-P	Field mustard	nucleus	43.12	8.33
TraesCS1B01G315300.1	Wheat	plastid	29.36	8.32
TraesCS1A01G304700.1	Wheat	nucleus	29.82	8.0
Solyc08g023280.2.1	Tomato	nucleus	35.78	7.82
Solyc09g066080.1.1	Tomato	cytosol	3.21	2.87
Solyc12g041980.1.1	Tomato	mitochondrion	3.21	2.85

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	InterPro:BRCA1-associated	InterPro:EPHD	GO:GO:0000724	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005886	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464
GO:GO:0006629	GO:GO:0006950	GO:GO:0006974	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031436	GO:GO:0035066	GO:GO:0035067	GO:GO:0042127	GO:GO:0045717
GO:GO:0045944	GO:GO:0046872	GO:GO:0070531	GO:GO:0071158	InterPro:IPR013083	InterPro:IPR034732
UniProt:K4CUN5	PFAM:PF13771	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00249
EnsemblPlantsGene:Solyc09g066090.2	EnsemblPlants:Solyc09g066090.2.1	UniParc:UPI000276CB4C	InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	:

Description

No Description!

Coordinates

chr9:-:64444318..64446593

Molecular Weight (calculated)

24558.8 Da

IEP (calculated)

8.491

GRAVY (calculated)

-0.360

Length

218 amino acids

Sequence
(BLAST)

001: MLCIVHERDI KRQKKINSGL SEMSLESHGH ILQRCPSSEI VADSNCNLEY KICESPNVVQ PKAVIDQHPP KGSVCAFCHS AKTKEKTGPF LYFANGREVV
101: GNVTSLSKVI CVHSKCIEWT PQVYYEGEII QNLDTELARA AKLKCSSCGM KGAALGCYVT SCRRSYHVPC AFEIQDCQWD MENFVMLCPI HKSVKFPNEK
201: SKSRKHIRRE MHPKASPL

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.