Factsheet for HORVU2Hr1G088910.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G088840.1	Barley	nucleus	79.63	49.04
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	70.23	47.11
TraesCS2A01G384900.1	Wheat	nucleus	71.8	44.57
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	71.54	43.49
Solyc09g066090.2.1	Tomato	nucleus	19.06	33.49
Os04t0512400-01	Rice	cytosol	49.61	30.21
EES12490	Sorghum	cytosol, nucleus, plasma membrane	49.09	30.18
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	47.52	27.96
Solyc12g042000.1.1	Tomato	nucleus	14.36	26.57
VIT_07s0005g03940.t01	Wine grape	plastid	24.8	22.67
Solyc05g016230.2.1	Tomato	nucleus	25.07	21.38
GSMUA_Achr8P12560_001	Banana	nucleus	31.07	18.68
KRG95712	Soybean	nucleus	31.07	17.63
KRH67433	Soybean	nucleus	30.29	17.11
CDY68257	Canola	mitochondrion, plastid	10.18	16.74
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	30.29	16.52
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	29.77	16.17
CDY10084	Canola	vacuole	25.59	14.06
AT1G04020.1	Thale cress	nucleus	25.85	13.88
HORVU0Hr1G002630.3	Barley	mitochondrion	22.72	12.99
HORVU1Hr1G069020.11	Barley	plastid	21.67	11.87
Solyc09g066080.1.1	Tomato	cytosol	6.79	10.66
Solyc12g041980.1.1	Tomato	mitochondrion	6.53	10.16
HORVU1Hr1G077590.4	Barley	plastid	25.07	9.5
CDY32524	Canola	cytosol	24.8	8.68
Bra032532.1-P	Field mustard	nucleus	25.33	8.59
HORVU4Hr1G010810.1	Barley	cytosol	0.78	6.38

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	UniProt:A0A287IUY2	InterPro:BRCA1-associated	InterPro:EPHD	GO:GO:0003674
GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	EnsemblPlantsGene:HORVU2Hr1G088910	EnsemblPlants:HORVU2Hr1G088910.1
InterPro:IPR013083	InterPro:IPR034732	PFAM:PF13771	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1
SMART:SM00249	UniParc:UPI000B465985	InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chrchr2H:-:635705217..635708385

Molecular Weight (calculated)

40803.6 Da

IEP (calculated)

5.603

GRAVY (calculated)

-0.578

Length

383 amino acids

Sequence
(BLAST)

001: MSLELGNQAA IPVAKVASQQ TPESGTTSSY NLVTSLLPCN QSAGPANENV DGAQAMDPAP GNRTDDVKVE PTVIVQTGPC GSQTPNGSGD LECDSNYLEG
101: ELITSGSPPQ STLKRGPNVT DDHTRGLKRQ KSSDQSEKQP SMTGWKCEFC HTSEISQCTG PFLHCLNEEL VKDDQAWKSN VLHVHEKCAE WAPQAYFEGD
201: MIKRLESEVA RSSKMKCGIC GLKGAALGCL VKSCRKSYHL PCARGVSDCR WDEGEFVMLC PSHSSKRLPC ERSKSKNKKA AQPQQPSSDT TVLGDSNSPF
301: PMEMNELWTS FCPASEWVIC GSALSDQDKE ILNQFEYHSG VTTTNNWSSN VXXXXXXXXT NTEHVVGHGR FSWPYLLGNG LSM

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.