Factsheet for Zm00001d003040_P001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, extracellular, nucleus

Predictor Summary:

extracellular 1
mitochondrion 1
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, vacuole
Any Predictor:	extracellular, mitochondrion, vacuole
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12490	Sorghum	cytosol, nucleus, plasma membrane	85.41	89.25
Os04t0512400-01	Rice	cytosol	69.89	72.34
TraesCS2A01G384900.1	Wheat	nucleus	59.45	62.72
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	54.53	62.17
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	58.99	60.95
HORVU2Hr1G088840.1	Barley	nucleus	58.22	60.93
HORVU2Hr1G088910.1	Barley	plastid	27.96	47.52
GSMUA_Achr8P12560_001	Banana	nucleus	43.16	44.11
VIT_07s0005g03940.t01	Wine grape	plastid	26.42	41.05
Solyc09g066080.1.1	Tomato	cytosol	15.36	40.98
Solyc05g016230.2.1	Tomato	nucleus	27.19	39.42
Solyc12g041980.1.1	Tomato	mitochondrion	14.59	38.62
Solyc09g066090.2.1	Tomato	nucleus	12.6	37.61
Solyc12g042000.1.1	Tomato	nucleus	11.37	35.75
KRG95712	Soybean	nucleus	35.64	34.37
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	37.02	34.33
KRH67433	Soybean	nucleus	35.64	34.22
PGSC0003DMT400038153	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	36.71	33.9
AT1G04020.1	Thale cress	nucleus	33.64	30.72
CDY10084	Canola	vacuole	32.1	29.99
Zm00001d017078_P002	Maize	cytosol	22.12	27.27
CDY68257	Canola	mitochondrion, plastid	9.52	26.61
Zm00001d038667_P001	Maize	nucleus	27.34	19.37
Bra032532.1-P	Field mustard	nucleus	32.57	18.78
CDY32524	Canola	cytosol	30.11	17.92

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	UniProt:A0A1D6E647	InterPro:BRCA1-associated	InterPro:BRCT_dom
InterPro:BRCT_dom_sf	ncoils:Coil	InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046872	InterPro:IPR001357	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR034732
InterPro:IPR036420	ProteinID:ONM15939.1	PFAM:PF00097	PFAM:PF00533	PFAM:PF13771	PFscan:PS50089
PFscan:PS50172	PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184	SMART:SM00249
SMART:SM00292	SUPFAM:SSF52113	SUPFAM:SSF57850	UniParc:UPI0008435846	EnsemblPlantsGene:Zm00001d003040	EnsemblPlants:Zm00001d003040_P001
EnsemblPlants:Zm00001d003040_T001	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_PHD	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

ATBRCA1

Coordinates

chr2:-:30082227..30086375

Molecular Weight (calculated)

70921.3 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.298

Length

651 amino acids

Sequence
(BLAST)

001: MENLRRFLNP LVLNLQKMEL ELTCPVCLKL LTSPTTLPCY HTSCSKCALT PTSKGYSCAI CKSGYCSQDL RPASHLESIV SIHRSLSSTV STMIEQQDSQ
101: INIHVAKAAS HGTPESGNRS GVEEKSDQMK SYNPVASKLV YNQPTGPAFG NIDSVQAKDP AFENNAGAAA VAPMAFVRKG HSGSQSSDGP GDLDCDSNDL
201: EGELMTSLSP LQTALKREAN AMDDHTRELK KQKSNDQVQR QTNMASAWKC EFCHSSQVTE CTGPLSHYLN GEPVEADQAW KSSVQHVHEK CIEWYVPGNF
301: HDNISERILH CTDLAPQAFF TGDTANNLGP ELARASKIKC SVCGLKGAAL GCLVKSCRKS FHVPCAYNIK GCKWDQENFV MLCPTHSSKK LPCERLKPKK
401: KAKLQQPSSD IDGPISPSPM QRAELWTASP FLTSEWVICG SALVGHEKEI LDQFECHTGI TVTNTWSSDV THVIANTDER GACARTLKVL MAILAGKWVL
501: NVNWLKACME AREPVPEEPY EIRCDVHGSV DGPRSGRLRA MQQAPGLFAG LTFYFSGHFM PGYRANLEDL IAAAGGSVLE KAELSSTSLI LYSMEAPPPH
601: NNLDALETIN KRLAEAQELA TTAGCKAIPH TWLLDCIASC AVELNVSCST A

Best Arabidopsis Sequence Match ( AT1G04020.2 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKG KRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.